Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R1Y80_RS28320 Genome accession   NZ_CP136798
Coordinates   6252971..6254089 (+) Length   372 a.a.
NCBI ID   WP_100564867.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6247971..6259089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS28295 (R1Y80_28270) - 6248295..6249209 (-) 915 WP_093445162.1 hypothetical protein -
  R1Y80_RS28300 (R1Y80_28275) - 6249289..6249483 (+) 195 WP_006128024.1 DUF3046 domain-containing protein -
  R1Y80_RS28305 (R1Y80_28280) - 6249749..6250915 (+) 1167 WP_354598973.1 AI-2E family transporter -
  R1Y80_RS28310 (R1Y80_28285) - 6250906..6251790 (-) 885 WP_354598974.1 SDR family oxidoreductase -
  R1Y80_RS28315 (R1Y80_28290) - 6251911..6252531 (-) 621 WP_354598174.1 dihydrofolate reductase family protein -
  R1Y80_RS28320 (R1Y80_28295) recA 6252971..6254089 (+) 1119 WP_100564867.1 recombinase RecA Machinery gene
  R1Y80_RS28325 (R1Y80_28300) recX 6254093..6254842 (+) 750 WP_354598175.1 recombination regulator RecX -
  R1Y80_RS28330 (R1Y80_28305) - 6254894..6255520 (-) 627 WP_100564869.1 hypothetical protein -
  R1Y80_RS28335 (R1Y80_28310) - 6255712..6256125 (-) 414 WP_100564870.1 rhodanese-like domain-containing protein -
  R1Y80_RS28340 (R1Y80_28315) - 6256122..6256730 (-) 609 WP_354598176.1 cysteine dioxygenase -
  R1Y80_RS28345 - 6256804..6256950 (-) 147 WP_354598975.1 putative leader peptide -
  R1Y80_RS28350 (R1Y80_28320) - 6256975..6258681 (-) 1707 WP_100564872.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39435.80 Da        Isoelectric Point: 6.1802

>NTDB_id=815586 R1Y80_RS28320 WP_100564867.1 6252971..6254089(+) (recA) [Streptomyces sp. JL1001]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPDADAGEPGADATPAADTAAKPAATATTKAKPAKTAAAKS

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=815586 R1Y80_RS28320 WP_100564867.1 6252971..6254089(+) (recA) [Streptomyces sp. JL1001]
ATGGCAGGAACCGACCGCGAGAAGGCGCTGGACGCCGCGCTCGCACAGATTGAACGACAGTTCGGCAAGGGTGCGGTGAT
GCGCCTCGGTGAACGGCCGAACGAGCCCATCGAGGTCATCCCCACGGGATCGACCGCCCTCGACGTCGCCCTCGGCGTCG
GCGGCCTGCCGCGCGGCCGCGTGGTGGAGGTGTACGGACCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGCGCCAGGGCGGCTCGGTGGCCTTCATCGACGCCGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAGCCTCATCCTGTCCCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCACCGACATGCTGGTGC
GCTCGGGCGCGCTGGACCTGATCGTCATCGACTCCGTGGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGTCTCCAGGCCCGGCTGATGAGCCAGGCCCTCCGCAAGATCACCAGTGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTACGCCTCGACATCCGCCGGATCGAGACGCTGAAGGACGGCACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGACTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCCTGGAGAAGCTGGGCGTCGGTGTCCGCCCGGACGCCGACGCGGGCGAGCCCGGCGCGGACGCGACCCCGGC
GGCCGACACGGCGGCGAAGCCCGCGGCCACCGCGACCACCAAGGCCAAGCCGGCCAAGACCGCGGCGGCCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68

87.366

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

67.485

87.634

0.591
  recA Ralstonia pseudosolanacearum GMI1000

69.329

84.14

0.583
  recA Staphylococcus aureus strain ATCC 12600

66.564

87.634

0.583
  recA Neisseria gonorrhoeae strain FA1090

67.812

86.022

0.583
  recA Neisseria gonorrhoeae MS11

67.812

86.022

0.583
  recA Vibrio cholerae strain A1552

66.873

86.828

0.581
  recA Acinetobacter baumannii D1279779

66.873

86.828

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

86.828

0.581
  recA Acinetobacter nosocomialis M2

66.563

86.828

0.578
  recA Acinetobacter baylyi ADP1

66.563

86.828

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

63.69

90.323

0.575
  recA Streptococcus thermophilus LMG 18311

61.538

90.86

0.559
  recA Streptococcus mutans UA159

62.538

88.978

0.556
  recA Streptococcus pyogenes NZ131

62.727

88.71

0.556
  recA Streptococcus thermophilus LMD-9

61.934

88.978

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

88.441

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

87.634

0.551
  recA Streptococcus mitis SK321

61.631

88.978

0.548
  recA Streptococcus mitis NCTC 12261

61.631

88.978

0.548
  recA Lactococcus lactis subsp. cremoris KW2

62.462

87.366

0.546
  recA Helicobacter pylori strain NCTC11637

62.462

87.366

0.546
  recA Helicobacter pylori 26695

62.462

87.366

0.546
  recA Streptococcus pneumoniae TIGR4

61.329

88.978

0.546
  recA Streptococcus pneumoniae R36A

61.329

88.978

0.546
  recA Streptococcus pneumoniae Rx1

61.329

88.978

0.546
  recA Streptococcus pneumoniae D39

61.329

88.978

0.546
  recA Streptococcus pneumoniae R6

61.329

88.978

0.546
  recA Glaesserella parasuis strain SC1401

63.043

86.559

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

87.903

0.508