Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ROT04_RS06990 Genome accession   NZ_CP135174
Coordinates   1482696..1483736 (+) Length   346 a.a.
NCBI ID   WP_003092260.1    Uniprot ID   Q02R89
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477696..1488736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS06975 (ROT04_06975) - 1478990..1480216 (+) 1227 WP_128733777.1 DUF4765 family protein -
  ROT04_RS06980 (ROT04_06980) - 1480901..1481908 (-) 1008 WP_003092265.1 TolB family protein -
  ROT04_RS06985 (ROT04_06985) - 1482056..1482562 (+) 507 WP_003092262.1 CinA family protein -
  ROT04_RS06990 (ROT04_06990) recA 1482696..1483736 (+) 1041 WP_003092260.1 recombinase RecA Machinery gene
  ROT04_RS06995 (ROT04_06995) recX 1483742..1484203 (+) 462 WP_023106051.1 recombination regulator RecX -
  ROT04_RS07000 (ROT04_07000) - 1484152..1485294 (-) 1143 WP_128733775.1 LOG family protein -
  ROT04_RS07005 (ROT04_07005) - 1485377..1486780 (-) 1404 WP_003092253.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36879.15 Da        Isoelectric Point: 5.1581

>NTDB_id=810339 ROT04_RS06990 WP_003092260.1 1482696..1483736(+) (recA) [Pseudomonas aeruginosa strain PARM_L1]
MDENKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEDNPEIGSVLEK
TIRDQLLAKSGPVKADAEEVADAEAD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=810339 ROT04_RS06990 WP_003092260.1 1482696..1483736(+) (recA) [Pseudomonas aeruginosa strain PARM_L1]
ATGGACGAGAACAAGAAGCGCGCCCTGGCCGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCGATCCCGGCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTCGGCATCGGCG
GCCTGCCCAAGGGTCGGATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTCTCGGTGATCGCC
GAGGCCCAGAAACAGGGCGCCACCTGTGCCTTCGTCGACGCCGAGCACGCGCTCGATCCCGACTATGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
GCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAATATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTGGGTAGCGAA
ACCCGCGTCAAGGTGGTGAAGAACAAGGTTTCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGTACCGGCGAGATCATCGACCTGGGCGTGCAATTGGGCCTGGTCGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGCCAGGGCAAGGCGAACGCCGCCAAGTACCTGGAAGACAATCCGGAGATCGGTTCGGTGCTGGAGAAG
ACCATCCGCGACCAGCTGCTGGCCAAGAGCGGTCCGGTGAAGGCCGACGCCGAAGAAGTGGCTGACGCCGAAGCCGATTG
A

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02R89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.751

100

0.908
  recA Acinetobacter baumannii D1279779

73.256

99.422

0.728
  recA Acinetobacter baylyi ADP1

73.684

98.844

0.728
  recA Acinetobacter nosocomialis M2

73.607

98.555

0.725
  recA Vibrio cholerae strain A1552

75.535

94.509

0.714
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.535

94.509

0.714
  recA Glaesserella parasuis strain SC1401

71.594

99.711

0.714
  recA Ralstonia pseudosolanacearum GMI1000

73.633

89.884

0.662
  recA Neisseria gonorrhoeae MS11

70.37

93.642

0.659
  recA Neisseria gonorrhoeae strain FA1090

70.37

93.642

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.509

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.721

97.399

0.601
  recA Staphylococcus aureus strain ATCC 12600

60.35

99.133

0.598
  recA Helicobacter pylori strain NCTC11637

62.385

94.509

0.59
  recA Helicobacter pylori 26695

61.774

94.509

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

93.064

0.581
  recA Streptococcus mitis NCTC 12261

57.514

100

0.575
  recA Streptococcus pneumoniae Rx1

57.225

100

0.572
  recA Streptococcus pneumoniae R36A

57.225

100

0.572
  recA Streptococcus pneumoniae D39

57.225

100

0.572
  recA Streptococcus pneumoniae TIGR4

57.225

100

0.572
  recA Streptococcus pneumoniae R6

57.225

100

0.572
  recA Streptococcus mitis SK321

57.225

100

0.572
  recA Streptococcus pyogenes NZ131

56.322

100

0.566
  recA Streptococcus mutans UA159

59.939

94.509

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.859

90.173

0.558
  recA Streptococcus thermophilus LMG 18311

58.769

93.931

0.552
  recA Streptococcus thermophilus LMD-9

58.769

93.931

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.963

94.509

0.529
  recA Lactococcus lactis subsp. cremoris KW2

56.037

93.353

0.523