Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RPQ07_RS09785 Genome accession   NZ_CP135086
Coordinates   2174532..2175662 (-) Length   376 a.a.
NCBI ID   WP_313943719.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2169532..2180662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS09755 (RPQ07_09755) - 2169807..2170712 (+) 906 WP_313943715.1 amino acid ABC transporter permease -
  RPQ07_RS09760 (RPQ07_09760) - 2170942..2172537 (+) 1596 WP_313943716.1 FAD-dependent monooxygenase -
  RPQ07_RS09765 (RPQ07_09765) - 2172585..2172656 (+) 72 WP_309544753.1 putative leader peptide -
  RPQ07_RS09770 (RPQ07_09770) - 2172871..2173428 (+) 558 WP_413777829.1 cysteine dioxygenase -
  RPQ07_RS09775 (RPQ07_09775) - 2173425..2173820 (+) 396 WP_313943717.1 rhodanese-like domain-containing protein -
  RPQ07_RS09780 (RPQ07_09780) recX 2173956..2174528 (-) 573 WP_313943718.1 recombination regulator RecX -
  RPQ07_RS09785 (RPQ07_09785) recA 2174532..2175662 (-) 1131 WP_313943719.1 recombinase RecA Machinery gene
  RPQ07_RS09790 (RPQ07_09790) - 2175894..2177189 (-) 1296 WP_313948838.1 AI-2E family transporter -
  RPQ07_RS09795 (RPQ07_09795) - 2177371..2177565 (-) 195 WP_313943720.1 DUF3046 domain-containing protein -
  RPQ07_RS09800 (RPQ07_09800) - 2177645..2178580 (+) 936 WP_313943721.1 hypothetical protein -
  RPQ07_RS09805 (RPQ07_09805) - 2178621..2178929 (-) 309 WP_313943722.1 AzlD domain-containing protein -
  RPQ07_RS09810 (RPQ07_09810) - 2178926..2179822 (-) 897 WP_413777721.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39613.09 Da        Isoelectric Point: 5.9121

>NTDB_id=808734 RPQ07_RS09785 WP_313943719.1 2174532..2175662(-) (recA) [Streptomyces sp. AM8-1-1]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRAGGSVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVKPEAPAAEPGADAAGSPAAPAEDAAKSVPAPATKAKAAKTAAAKG

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=808734 RPQ07_RS09785 WP_313943719.1 2174532..2175662(-) (recA) [Streptomyces sp. AM8-1-1]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTGGGCGAGCGGCCGAACGAGCCCATCGAGGTCATCCCCACCGGGTCGACCGCGCTCGACGTCGCGCTCGGCGTCG
GCGGACTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGCCCGGAGTCCTCCGGAAAGACGACTCTCACGCTGCACGCCGTC
GCCAACGCCCAGAGGGCAGGCGGCTCGGTGGCATTCGTGGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGTGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAACAGGCGCTCGAGATCGTCGACATGCTCGTCC
GCTCCGGCGCGCTCGACCTGATCGTCATCGACTCCGTCGCCGCGCTGGTGCCGCGGGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTCGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGGAAGATCACCTCCGCGCTGAACCAGTCGAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGCG
CGCTGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGGCGAATCGAGACCCTGAAGGACGGCACCGACGCGGTGGGCAAC
CGCACCCGGGTCAAGGTCGTCAAGAACAAGGTCGCACCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGCGTGGAGAACGGCTTCGTGCGCAAGGCGGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGACAGGGCAAGGAGAACGCCCGTAACTTCCTGAAGGACAACCCCGATCTCGCCAACGAGATCGAG
AAGAAGATCCTCGAGAAGCTGGGCGTCGGCGTGAAGCCGGAGGCGCCGGCCGCCGAGCCCGGTGCGGACGCGGCGGGCAG
CCCGGCTGCTCCGGCCGAGGACGCGGCGAAGTCGGTGCCTGCGCCCGCCACCAAGGCCAAGGCGGCCAAGACGGCGGCGG
CCAAGGGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.374

90.957

0.604
  recA Neisseria gonorrhoeae strain FA1090

68.438

85.106

0.582
  recA Neisseria gonorrhoeae MS11

68.438

85.106

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

86.702

0.58
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.702

0.58
  recA Ralstonia pseudosolanacearum GMI1000

69.01

83.245

0.574
  recA Acinetobacter baylyi ADP1

66.873

85.904

0.574
  recA Acinetobacter baumannii D1279779

66.873

85.904

0.574
  recA Acinetobacter nosocomialis M2

66.563

85.904

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

85.904

0.569
  recA Vibrio cholerae strain A1552

66.254

85.904

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

63.473

88.83

0.564
  recA Streptococcus mutans UA159

62.236

88.032

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

86.702

0.548
  recA Streptococcus pyogenes NZ131

62.424

87.766

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

87.5

0.543
  recA Streptococcus thermophilus LMG 18311

61.631

88.032

0.543
  recA Streptococcus thermophilus LMD-9

61.631

88.032

0.543
  recA Helicobacter pylori strain NCTC11637

62.462

86.436

0.54
  recA Helicobacter pylori 26695

62.462

86.436

0.54
  recA Streptococcus mitis SK321

61.329

88.032

0.54
  recA Streptococcus mitis NCTC 12261

61.329

88.032

0.54
  recA Glaesserella parasuis strain SC1401

63.043

85.638

0.54
  recA Lactococcus lactis subsp. cremoris KW2

62.154

86.436

0.537
  recA Streptococcus pneumoniae R36A

61.027

88.032

0.537
  recA Streptococcus pneumoniae Rx1

61.027

88.032

0.537
  recA Streptococcus pneumoniae D39

61.027

88.032

0.537
  recA Streptococcus pneumoniae R6

61.027

88.032

0.537
  recA Streptococcus pneumoniae TIGR4

61.027

88.032

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

86.968

0.503