Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RPQ02_RS36370 Genome accession   NZ_CP135085
Coordinates   8206861..8207937 (-) Length   358 a.a.
NCBI ID   WP_313940800.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8201861..8212937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS36340 (RPQ02_36340) - 8202425..8203093 (-) 669 WP_313940794.1 class I SAM-dependent DNA methyltransferase -
  RPQ02_RS36345 (RPQ02_36345) - 8203323..8203694 (-) 372 WP_313940795.1 hypothetical protein -
  RPQ02_RS36350 (RPQ02_36350) - 8203964..8204500 (+) 537 WP_313940796.1 NUDIX hydrolase -
  RPQ02_RS36355 (RPQ02_36355) - 8204518..8205087 (+) 570 WP_313940797.1 suppressor of fused domain protein -
  RPQ02_RS36360 (RPQ02_36360) - 8205323..8205961 (-) 639 WP_313940798.1 hypothetical protein -
  RPQ02_RS36365 (RPQ02_36365) - 8206059..8206810 (+) 752 WP_313940799.1 IS5 family transposase -
  RPQ02_RS36370 (RPQ02_36370) recA 8206861..8207937 (-) 1077 WP_313940800.1 recombinase RecA Machinery gene
  RPQ02_RS36375 (RPQ02_36375) - 8208586..8209347 (+) 762 WP_313940801.1 DeoR/GlpR family DNA-binding transcription regulator -
  RPQ02_RS36380 (RPQ02_36380) - 8209457..8210821 (+) 1365 WP_313940802.1 sugar ABC transporter substrate-binding protein -
  RPQ02_RS36385 (RPQ02_36385) - 8210818..8211801 (+) 984 WP_413777915.1 carbohydrate ABC transporter permease -
  RPQ02_RS36390 (RPQ02_36390) - 8211798..8212694 (+) 897 WP_313940803.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38083.34 Da        Isoelectric Point: 5.3237

>NTDB_id=808713 RPQ02_RS36370 WP_313940800.1 8206861..8207937(-) (recA) [Streptomyces sp. AM2-3-1]
MAGTDHEKALDAALAQIERKFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGAVAFIDAEHALDPEYARKLGVDTDNLILSQPDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGEMG
DSHMGLQARLMSQALRKITSALNQTKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLADEIE
KKILEKLGIGVSAMAAVAEDTGAVPVPDTARTSTGSAA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=808713 RPQ02_RS36370 WP_313940800.1 8206861..8207937(-) (recA) [Streptomyces sp. AM2-3-1]
ATGGCAGGAACCGATCACGAGAAGGCGCTGGACGCCGCGCTCGCACAGATCGAGCGGAAGTTCGGCAAGGGTGCGGTGAT
GCGCCTCGGCGAGCGGCCGAACGAGCCCATCGAGGTGATCCCCACCGGGTCGACCGCGCTGGACGTGGCGCTCGGTGTGG
GCGGTCTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGTTGCACGCAGTG
GCGAACGCACAGAAGGCCGGCGGCGCGGTGGCCTTCATCGACGCCGAGCACGCGCTGGACCCGGAGTACGCCAGAAAGCT
CGGCGTCGACACCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAACAGGCGCTGGAGATCGTCGACATCCTGATCC
GCTCCGGCGCGATCGACCTGATCGTCATCGACTCCGTCGCGGCACTGGTGCCCCGTGCCGAGATCGAGGGCGAGATGGGC
GACTCCCACATGGGTCTGCAGGCCCGACTGATGAGCCAGGCACTCCGCAAGATCACCAGCGCGCTCAACCAGACGAAGAC
GACGGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTCATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCATCGGTACGCCTCGACATCCGGCGTATCGAGACGCTCAAGGACGGCACCGACGCCGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTACGCAAGGCGGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCCGACGAGATCGAG
AAGAAGATCCTCGAGAAGCTCGGAATCGGGGTGTCGGCGATGGCCGCGGTCGCCGAGGACACGGGCGCCGTCCCGGTCCC
TGATACCGCCCGGACCTCGACGGGAAGCGCCGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.536

89.665

0.615
  recA Neisseria gonorrhoeae strain FA1090

68.75

89.385

0.615
  recA Neisseria gonorrhoeae MS11

68.75

89.385

0.615
  recA Acinetobacter baylyi ADP1

64.516

95.251

0.615
  recA Pseudomonas stutzeri DSM 10701

64.793

94.413

0.612
  recA Vibrio cholerae strain A1552

63.717

94.693

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.717

94.693

0.603
  recA Acinetobacter baumannii D1279779

66.873

90.223

0.603
  recA Acinetobacter nosocomialis M2

66.563

90.223

0.601
  recA Staphylococcus aureus strain ATCC 12600

65.644

91.061

0.598
  recA Streptococcus pyogenes NZ131

61.494

97.207

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

91.061

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.908

94.134

0.592
  recA Streptococcus thermophilus LMD-9

60.227

98.324

0.592
  recA Glaesserella parasuis strain SC1401

62.798

93.855

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

64.134

91.899

0.589
  recA Helicobacter pylori 26695

60.87

96.369

0.587
  recA Helicobacter pylori strain NCTC11637

60.87

96.369

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

91.899

0.584
  recA Streptococcus thermophilus LMG 18311

60.933

95.81

0.584
  recA Streptococcus mutans UA159

62.84

92.458

0.581
  recA Streptococcus mitis NCTC 12261

61.934

92.458

0.573
  recA Streptococcus pneumoniae R6

61.631

92.458

0.57
  recA Streptococcus pneumoniae R36A

61.631

92.458

0.57
  recA Streptococcus pneumoniae Rx1

61.631

92.458

0.57
  recA Streptococcus pneumoniae D39

61.631

92.458

0.57
  recA Streptococcus pneumoniae TIGR4

61.631

92.458

0.57
  recA Streptococcus mitis SK321

61.631

92.458

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.462

90.782

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

89.665

0.536