Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RPQ02_RS28845 Genome accession   NZ_CP135085
Coordinates   6443042..6444175 (+) Length   377 a.a.
NCBI ID   WP_313939514.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6438042..6449175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS28820 (RPQ02_28820) - 6438728..6439033 (+) 306 WP_030927072.1 AzlD domain-containing protein -
  RPQ02_RS28825 (RPQ02_28825) - 6439232..6440146 (-) 915 WP_313939513.1 hypothetical protein -
  RPQ02_RS28830 (RPQ02_28830) - 6440226..6440420 (+) 195 WP_030974167.1 DUF3046 domain-containing protein -
  RPQ02_RS28835 (RPQ02_28835) - 6440604..6441776 (+) 1173 WP_313941695.1 AI-2E family transporter -
  RPQ02_RS28840 (RPQ02_28840) - 6441867..6442774 (-) 908 Protein_5682 SDR family oxidoreductase -
  RPQ02_RS28845 (RPQ02_28845) recA 6443042..6444175 (+) 1134 WP_313939514.1 recombinase RecA Machinery gene
  RPQ02_RS28850 (RPQ02_28850) recX 6444179..6444856 (+) 678 WP_313939515.1 recombination regulator RecX -
  RPQ02_RS28855 (RPQ02_28855) - 6444970..6445608 (-) 639 WP_313939516.1 hypothetical protein -
  RPQ02_RS28860 (RPQ02_28860) - 6445815..6446453 (+) 639 WP_313939517.1 helix-turn-helix domain-containing protein -
  RPQ02_RS28865 (RPQ02_28865) - 6446450..6449005 (+) 2556 WP_313939518.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39735.30 Da        Isoelectric Point: 6.5242

>NTDB_id=808693 RPQ02_RS28845 WP_313939514.1 6443042..6444175(+) (recA) [Streptomyces sp. AM2-3-1]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRLGGSVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGIGVRPEAALPAEPGADAAGGAAAAADSAAKSVPAPAGKAKPAKTAAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=808693 RPQ02_RS28845 WP_313939514.1 6443042..6444175(+) (recA) [Streptomyces sp. AM2-3-1]
ATGGCAGGAACCGACCGCGAGAAGGCGTTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGTGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCCATCGAGGTGATCCCCACCGGGTCGACCGCACTCGACGTCGCCCTCGGCGTCG
GCGGACTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCGGTG
GCGAATGCGCAGCGGCTCGGCGGCTCGGTGGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGTGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCGCTCGAGATCGTGGACATGCTGGTCC
GCTCGGGCGCTCTCGACCTGATCGTCATCGACTCCGTCGCGGCACTCGTGCCCCGTGCGGAGATCGAGGGTGAGATGGGC
GACTCGCACGTGGGCCTGCAGGCCCGACTGATGAGCCAGGCACTCCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCATCGGTGCGCCTGGACATCCGGCGTATCGAGACGCTCAAGGACGGCACCGACGCCGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGCGTGGAGCACGGCTTCGTACGCAAGGCGGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCCTCGAGAAGCTGGGCATCGGTGTCAGGCCGGAGGCGGCGCTGCCCGCCGAACCCGGGGCGGACGCGGCGGG
CGGCGCGGCCGCTGCGGCCGACAGTGCGGCGAAGTCGGTGCCCGCTCCGGCCGGCAAGGCGAAGCCGGCCAAGACTGCGG
CGGCCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.082

90.716

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.472

0.581
  recA Staphylococcus aureus strain ATCC 12600

67.178

86.472

0.581
  recA Acinetobacter baumannii D1279779

67.183

85.676

0.576
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.024

0.576
  recA Neisseria gonorrhoeae strain FA1090

67.812

84.881

0.576
  recA Neisseria gonorrhoeae MS11

67.812

84.881

0.576
  recA Vibrio cholerae strain A1552

66.873

85.676

0.573
  recA Acinetobacter baylyi ADP1

66.873

85.676

0.573
  recA Acinetobacter nosocomialis M2

66.873

85.676

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

85.676

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.905

89.655

0.573
  recA Streptococcus mitis NCTC 12261

57.766

97.347

0.562
  recA Streptococcus mitis SK321

57.493

97.347

0.56
  recA Helicobacter pylori strain NCTC11637

61.471

90.186

0.554
  recA Helicobacter pylori 26695

61.471

90.186

0.554
  recA Streptococcus mutans UA159

62.538

87.798

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.472

0.549
  recA Streptococcus pyogenes NZ131

62.727

87.533

0.549
  recA Glaesserella parasuis strain SC1401

61.677

88.594

0.546
  recA Streptococcus thermophilus LMG 18311

61.934

87.798

0.544
  recA Streptococcus thermophilus LMD-9

61.934

87.798

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.268

0.544
  recA Lactococcus lactis subsp. cremoris KW2

62.462

86.207

0.538
  recA Streptococcus pneumoniae TIGR4

61.329

87.798

0.538
  recA Streptococcus pneumoniae R36A

61.329

87.798

0.538
  recA Streptococcus pneumoniae Rx1

61.329

87.798

0.538
  recA Streptococcus pneumoniae D39

61.329

87.798

0.538
  recA Streptococcus pneumoniae R6

61.329

87.798

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.567

85.146

0.499