Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RLT59_RS35255 Genome accession   NZ_CP134612
Coordinates   7773200..7774276 (-) Length   358 a.a.
NCBI ID   WP_311307147.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7768200..7779276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS35245 (RLT59_35245) - 7771501..7771830 (+) 330 WP_311307145.1 hypothetical protein -
  RLT59_RS35250 (RLT59_35250) - 7771892..7773160 (-) 1269 WP_311307146.1 DUF6357 family protein -
  RLT59_RS35255 (RLT59_35255) recA 7773200..7774276 (-) 1077 WP_311307147.1 recombinase RecA Machinery gene
  RLT59_RS35260 (RLT59_35260) - 7774511..7775116 (+) 606 WP_311307148.1 class I SAM-dependent methyltransferase -
  RLT59_RS35265 (RLT59_35265) - 7775227..7778655 (-) 3429 WP_311307149.1 GH92 family glycosyl hydrolase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37863.23 Da        Isoelectric Point: 6.0735

>NTDB_id=806915 RLT59_RS35255 WP_311307147.1 7773200..7774276(-) (recA) [Streptomyces sp. ITFR-6]
MAGTDQEKALDTALAQIERKFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGTVAFIDAEHALDPEYAKKLGVDTDNLILSQPDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGAMG
DSHMGLQARLMSQALRKITSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHAFVQKAGAWYTYEGGQLGQGKENARTFLKNNPHLTDEIE
KKILEKLGIGVAAKAAVADETGTVPVPDAAGALAGSAA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=806915 RLT59_RS35255 WP_311307147.1 7773200..7774276(-) (recA) [Streptomyces sp. ITFR-6]
ATGGCAGGAACCGACCAAGAGAAGGCGCTTGACACCGCGCTCGCACAGATCGAGCGCAAGTTCGGCAAGGGCGCGGTCAT
GCGCCTTGGTGAGCGGCCGAACGAGCCCATCGAAGTGATCCCCACCGGTTCGACGGCGCTCGACGTCGCGCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGGCCGGCGGCACGGTGGCGTTCATCGACGCCGAACACGCACTGGACCCCGAGTACGCGAAGAAGCT
CGGTGTCGACACCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAACAGGCGCTGGAGATCGTCGACATCCTGATCC
GCTCCGGCGCGATCGACCTGATCGTGATCGACTCCGTGGCGGCCTTGGTGCCACGTGCCGAGATCGAGGGCGCCATGGGT
GACTCCCACATGGGTCTACAGGCCCGCCTGATGAGCCAGGCGCTCCGTAAGATCACCAGTGCGCTCAGCCAGACGAGGAC
GACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGCGGCCGGG
CGCTGAAGTTCTACGCTTCGGTGCGTCTGGACATCCGACGGATCGAGACGTTGAAGGACGGAACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAACAGGCGGAGTTCGACATCCTCTACGGCCAGGG
GATCAGCCGTGAGGGCGGGCTGATCGACATGGGCGTGGAGCATGCGTTCGTACAGAAGGCTGGCGCCTGGTACACGTACG
AGGGTGGCCAGCTCGGCCAGGGCAAGGAGAACGCCCGTACCTTCCTCAAGAACAACCCTCATCTCACCGACGAGATCGAG
AAGAAGATCCTGGAGAAGCTCGGAATCGGGGTAGCGGCGAAGGCCGCGGTCGCCGACGAGACCGGCACCGTCCCTGTTCC
TGATGCCGCCGGGGCCTTGGCGGGAAGCGCCGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

65.68

94.413

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.68

94.413

0.62
  recA Acinetobacter baylyi ADP1

64.516

95.251

0.615
  recA Ralstonia pseudosolanacearum GMI1000

66.769

90.782

0.606
  recA Staphylococcus aureus strain ATCC 12600

65.951

91.061

0.601
  recA Acinetobacter baumannii D1279779

66.254

90.223

0.598
  recA Acinetobacter nosocomialis M2

66.254

90.223

0.598
  recA Pseudomonas stutzeri DSM 10701

65.635

90.223

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

91.061

0.589
  recA Vibrio cholerae strain A1552

65.015

90.223

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

90.223

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

91.061

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

91.899

0.581
  recA Helicobacter pylori 26695

63.385

90.782

0.575
  recA Helicobacter pylori strain NCTC11637

63.385

90.782

0.575
  recA Streptococcus pyogenes NZ131

62.424

92.179

0.575
  recA Streptococcus mitis SK321

59.195

97.207

0.575
  recA Streptococcus mutans UA159

61.934

92.458

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.31

91.899

0.573
  recA Glaesserella parasuis strain SC1401

63.354

89.944

0.57
  recA Streptococcus pneumoniae D39

61.027

92.458

0.564
  recA Streptococcus pneumoniae R6

61.027

92.458

0.564
  recA Streptococcus pneumoniae TIGR4

61.027

92.458

0.564
  recA Streptococcus mitis NCTC 12261

61.027

92.458

0.564
  recA Streptococcus thermophilus LMD-9

61.027

92.458

0.564
  recA Streptococcus thermophilus LMG 18311

61.027

92.458

0.564
  recA Streptococcus pneumoniae R36A

61.027

92.458

0.564
  recA Streptococcus pneumoniae Rx1

61.027

92.458

0.564
  recA Lactococcus lactis subsp. cremoris KW2

60.923

90.782

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

89.665

0.542