Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RLT59_RS08625 Genome accession   NZ_CP134612
Coordinates   1939975..1941108 (-) Length   377 a.a.
NCBI ID   WP_311302872.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1934975..1946108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS08610 (RLT59_08610) - 1935409..1937967 (-) 2559 WP_311302869.1 FtsX-like permease family protein -
  RLT59_RS08615 (RLT59_08615) - 1938306..1939040 (+) 735 WP_311302870.1 hypothetical protein -
  RLT59_RS08620 (RLT59_08620) recX 1939204..1939971 (-) 768 WP_311302871.1 recombination regulator RecX -
  RLT59_RS08625 (RLT59_08625) recA 1939975..1941108 (-) 1134 WP_311302872.1 recombinase RecA Machinery gene
  RLT59_RS08630 (RLT59_08630) - 1941305..1942480 (-) 1176 WP_311307654.1 AI-2E family transporter -
  RLT59_RS08635 (RLT59_08635) - 1942665..1942859 (-) 195 WP_311302873.1 DUF3046 domain-containing protein -
  RLT59_RS08640 (RLT59_08640) - 1942939..1943853 (+) 915 WP_311302874.1 hypothetical protein -
  RLT59_RS08645 (RLT59_08645) - 1943877..1944182 (-) 306 WP_311302875.1 AzlD domain-containing protein -
  RLT59_RS08650 (RLT59_08650) - 1944179..1945048 (-) 870 WP_399125061.1 AzlC family ABC transporter permease -
  RLT59_RS08655 (RLT59_08655) - 1945059..1945922 (-) 864 WP_311302876.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39772.34 Da        Isoelectric Point: 6.5233

>NTDB_id=806859 RLT59_RS08625 WP_311302872.1 1939975..1941108(-) (recA) [Streptomyces sp. ITFR-6]
MAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGTVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVDHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPDAASAEPAADAAAGTAAAPADGAAKPVSAAAGKTKPAKTMAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=806859 RLT59_RS08625 WP_311302872.1 1939975..1941108(-) (recA) [Streptomyces sp. ITFR-6]
ATGGCAGGAAACGACCGCGAGAAGGCGCTGGACGCCGCACTCGCACAGATTGAGCGGCAATTCGGCAAGGGCGCGGTCAT
GCGCCTAGGTGAGCGGCCGAACGAGCCCATCGAAGTGATCCCCACCGGTTCGACGGCGCTCGACGTCGCGCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGCTCGGCGGCACGGTGGCCTTCATCGACGCCGAACACGCGCTGGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCCCTTGAGATCGTGGACATGCTGATCC
GCTCGGGCGCCCTCGACCTGATCGTCATCGACTCCGTGGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTCCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACCACCGGTGGCCGCG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGACGGATCGAGACGCTCAAGGACGGCACCGACGCGGTCGGTAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAACAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGTGAGGGCGGCCTGATCGACATGGGCGTGGACCACGGCTTCGTGCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGATCTCGCCAACGAGATCGAG
AAGAAGATCCTGGAGAAGCTGGGCGTCGGTGTACGGCCCGACGCGGCCTCCGCCGAGCCCGCGGCGGACGCGGCGGCCGG
GACTGCCGCGGCCCCGGCCGACGGTGCGGCCAAGCCGGTGTCCGCTGCGGCCGGCAAGACCAAGCCGGCCAAGACGATGG
CGGCCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.789

90.716

0.597
  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.024

0.578
  recA Acinetobacter baumannii D1279779

67.492

85.676

0.578
  recA Acinetobacter nosocomialis M2

67.183

85.676

0.576
  recA Neisseria gonorrhoeae MS11

67.601

85.146

0.576
  recA Neisseria gonorrhoeae strain FA1090

67.601

85.146

0.576
  recA Acinetobacter baylyi ADP1

66.975

85.942

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

66.564

86.472

0.576
  recA Staphylococcus aureus strain ATCC 12600

66.564

86.472

0.576
  recA Vibrio cholerae strain A1552

66.873

85.676

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

85.676

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.473

88.594

0.562
  recA Streptococcus mutans UA159

63.444

87.798

0.557
  recA Streptococcus pyogenes NZ131

63.636

87.533

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

87.533

0.554
  recA Streptococcus thermophilus LMD-9

62.84

87.798

0.552
  recA Streptococcus thermophilus LMG 18311

62.84

87.798

0.552
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

86.737

0.549
  recA Streptococcus mitis NCTC 12261

62.538

87.798

0.549
  recA Streptococcus mitis SK321

62.538

87.798

0.549
  recA Glaesserella parasuis strain SC1401

61.062

89.92

0.549
  recA Streptococcus pneumoniae R6

62.236

87.798

0.546
  recA Streptococcus pneumoniae TIGR4

62.236

87.798

0.546
  recA Streptococcus pneumoniae Rx1

62.236

87.798

0.546
  recA Streptococcus pneumoniae R36A

62.236

87.798

0.546
  recA Streptococcus pneumoniae D39

62.236

87.798

0.546
  recA Helicobacter pylori strain NCTC11637

63.077

86.207

0.544
  recA Helicobacter pylori 26695

63.077

86.207

0.544
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.207

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.232

87.003

0.507