Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RLT57_RS24470 Genome accession   NZ_CP134605
Coordinates   5461299..5462417 (+) Length   372 a.a.
NCBI ID   WP_311299414.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5456299..5467417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS24445 (RLT57_24445) - 5457518..5458483 (+) 966 WP_311299410.1 AraC family transcriptional regulator -
  RLT57_RS24450 (RLT57_24450) - 5458494..5459264 (+) 771 WP_399129307.1 AzlC family ABC transporter permease -
  RLT57_RS24455 (RLT57_24455) - 5459261..5459587 (+) 327 WP_311299411.1 AzlD domain-containing protein -
  RLT57_RS24460 (RLT57_24460) - 5459611..5459805 (+) 195 WP_311299412.1 DUF3046 domain-containing protein -
  RLT57_RS24465 (RLT57_24465) - 5459904..5461010 (+) 1107 WP_311299413.1 AI-2E family transporter -
  RLT57_RS24470 (RLT57_24470) recA 5461299..5462417 (+) 1119 WP_311299414.1 recombinase RecA Machinery gene
  RLT57_RS24475 (RLT57_24475) recX 5462422..5462997 (+) 576 WP_311299415.1 recombination regulator RecX -
  RLT57_RS24480 (RLT57_24480) - 5463222..5464976 (-) 1755 WP_311299416.1 FAD-dependent monooxygenase -
  RLT57_RS24485 (RLT57_24485) - 5465282..5466052 (+) 771 WP_311299417.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39565.13 Da        Isoelectric Point: 6.5246

>NTDB_id=806776 RLT57_RS24470 WP_311299414.1 5461299..5462417(+) (recA) [Streptomyces sp. ITFR-21]
MAGNDREKALDAALAQIERQFGKGAVMRLGDRPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGTVAFVDAEHALDPDYAKALGVDTDNLILSQPDTGEQALEIVDMLVRSGAIDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQTKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAIGN
RTRVKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEQGFVRKSGAWYTYEGDQLGQGKENVRNFLRDNPDLADEIE
KRIKEKLGVGVPKPKVEAPGAQPGADAAGPAELAKAEVPAPKKVTKATAVKS

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=806776 RLT57_RS24470 WP_311299414.1 5461299..5462417(+) (recA) [Streptomyces sp. ITFR-21]
ATGGCAGGAAACGACCGCGAGAAGGCGCTTGACGCCGCTCTCGCACAGATTGAACGGCAGTTCGGCAAGGGCGCCGTCAT
GCGTCTCGGCGACCGGCCCAACGAGCCCATCGAGGTCATCCCCACCGGGTCGACCGCTCTGGACGTGGCCCTCGGCGTCG
GCGGTCTTCCGCGCGGCCGGGTCGTGGAGGTGTACGGGCCGGAGTCCTCCGGCAAGACCACCCTCACCCTGCACGCGGTC
GCCAACGCGCAGAAGGCCGGCGGCACGGTGGCGTTCGTGGACGCCGAGCACGCCCTGGACCCCGACTACGCCAAGGCCCT
CGGCGTCGACACGGACAACCTCATCCTGTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGTGCCATCGACCTGATCGTGATCGACTCCGTGGCAGCCCTCGTGCCGCGGGCCGAGATCGAGGGCGAGATGGGT
GACTCGCACGTGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGATCACCAGCGCGCTCAACCAGACCAAGAC
CACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACCACCGGCGGTCGCG
CGCTGAAGTTCTACGCCTCGGTCCGGCTCGACATCCGCCGGATCGAGACGCTCAAGGACGGCACCGACGCGATCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCATGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGGGTCGAGCAGGGCTTCGTCCGCAAGTCCGGCGCCTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGTCCGCAACTTCCTCCGGGACAACCCGGACCTGGCGGACGAGATCGAG
AAGCGGATCAAGGAGAAGCTGGGCGTGGGCGTGCCGAAGCCCAAGGTCGAAGCCCCGGGCGCACAGCCGGGTGCCGACGC
GGCAGGCCCGGCCGAGCTTGCCAAGGCGGAAGTCCCGGCCCCCAAGAAGGTGACCAAGGCCACCGCCGTCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.764

92.204

0.616
  recA Neisseria gonorrhoeae MS11

68.502

87.903

0.602
  recA Neisseria gonorrhoeae strain FA1090

68.502

87.903

0.602
  recA Ralstonia pseudosolanacearum GMI1000

70.288

84.14

0.591
  recA Acinetobacter baylyi ADP1

67.593

87.097

0.589
  recA Acinetobacter baumannii D1279779

66.873

86.828

0.581
  recA Staphylococcus aureus strain ATCC 12600

65.951

87.634

0.578
  recA Acinetobacter nosocomialis M2

66.563

86.828

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

65.644

87.634

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

64.742

88.441

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

87.903

0.567
  recA Helicobacter pylori 26695

64.308

87.366

0.562
  recA Helicobacter pylori strain NCTC11637

64.308

87.366

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

86.828

0.562
  recA Vibrio cholerae strain A1552

64.706

86.828

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.727

88.71

0.556
  recA Streptococcus mutans UA159

62.236

88.978

0.554
  recA Glaesserella parasuis strain SC1401

63.975

86.559

0.554
  recA Streptococcus pyogenes NZ131

62.424

88.71

0.554
  recA Lactococcus lactis subsp. cremoris KW2

61.329

88.978

0.546
  recA Streptococcus mitis NCTC 12261

61.027

88.978

0.543
  recA Streptococcus pneumoniae R6

60.725

88.978

0.54
  recA Streptococcus pneumoniae TIGR4

60.725

88.978

0.54
  recA Streptococcus thermophilus LMD-9

60.725

88.978

0.54
  recA Streptococcus mitis SK321

60.725

88.978

0.54
  recA Streptococcus thermophilus LMG 18311

60.725

88.978

0.54
  recA Streptococcus pneumoniae R36A

60.725

88.978

0.54
  recA Streptococcus pneumoniae Rx1

60.725

88.978

0.54
  recA Streptococcus pneumoniae D39

60.725

88.978

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

86.022

0.516