Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RI578_RS10740 Genome accession   NZ_CP134203
Coordinates   2324773..2325900 (-) Length   375 a.a.
NCBI ID   WP_310870885.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319773..2330900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS10710 (RI578_10710) - 2319896..2320774 (+) 879 WP_310870880.1 amino acid ABC transporter permease -
  RI578_RS10715 (RI578_10715) - 2320960..2322588 (+) 1629 WP_310870881.1 FAD-dependent monooxygenase -
  RI578_RS42690 - 2322762..2322809 (+) 48 WP_342781581.1 hypothetical protein -
  RI578_RS10725 (RI578_10725) - 2322872..2323417 (+) 546 WP_310870882.1 cysteine dioxygenase -
  RI578_RS10730 (RI578_10730) - 2323414..2323806 (+) 393 WP_310870883.1 rhodanese-like domain-containing protein -
  RI578_RS10735 (RI578_10735) recX 2323886..2324770 (-) 885 WP_310870884.1 recombination regulator RecX -
  RI578_RS10740 (RI578_10740) recA 2324773..2325900 (-) 1128 WP_310870885.1 recombinase RecA Machinery gene
  RI578_RS10745 (RI578_10745) - 2326180..2326380 (+) 201 WP_055419896.1 type II toxin-antitoxin system VapB family antitoxin -
  RI578_RS10750 (RI578_10750) - 2326602..2327873 (-) 1272 WP_310870886.1 AI-2E family transporter -
  RI578_RS10755 (RI578_10755) - 2327934..2328128 (-) 195 WP_210962767.1 DUF3046 domain-containing protein -
  RI578_RS10760 (RI578_10760) - 2328209..2329162 (+) 954 WP_310870887.1 hypothetical protein -
  RI578_RS10765 (RI578_10765) - 2329178..2329486 (-) 309 WP_210962765.1 AzlD domain-containing protein -
  RI578_RS10770 (RI578_10770) - 2329483..2330229 (-) 747 WP_310870888.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39729.18 Da        Isoelectric Point: 6.3768

>NTDB_id=802653 RI578_RS10740 WP_310870885.1 2324773..2325900(-) (recA) [Streptomyces sp. BB1-1-1]
MAGTDREKALDAALAQIERQFGKGAVMRMGDRSKEPIEVIPTGSTALDVALGVGGLPRGRVIEVYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEEPATEPSADAAASTAPADAAPAVPAPATAKATKSKAAAAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=802653 RI578_RS10740 WP_310870885.1 2324773..2325900(-) (recA) [Streptomyces sp. BB1-1-1]
ATGGCAGGAACCGACCGCGAGAAGGCCCTGGATGCCGCGCTCGCACAGATTGAACGGCAGTTCGGCAAGGGCGCGGTCAT
GCGCATGGGCGACCGGTCGAAGGAGCCCATCGAGGTCATCCCGACCGGGTCGACCGCGCTCGACGTGGCACTCGGCGTCG
GCGGCCTGCCGCGCGGCCGCGTCATCGAGGTCTACGGTCCCGAGTCCTCGGGCAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCACAGAAGGCCGGGGGCCAGGTCGCGTTCGTGGACGCGGAGCACGCCCTCGACCCCGAGTACGCGCAGAAGCT
CGGCGTCGACATCGACAACCTGATCCTGTCCCAGCCGGACAACGGTGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGTGCCCTCGACCTCATCGTCATCGACTCCGTCGCAGCGCTCGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGCCATGTCGGTCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGGAAGATCACCAGTGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCTCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGGCTCGACATCCGACGCATCGAGACGCTGAAGGACGGCACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCATGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGTGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTGAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTACGTCCCGAGGAGCCGGCCACCGAGCCGAGCGCGGACGCCGCCGCCTC
CACCGCCCCGGCCGACGCCGCACCGGCGGTGCCCGCCCCCGCGACCGCCAAGGCCACCAAGTCCAAGGCCGCGGCAGCCA
AGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.082

91.2

0.603
  recA Neisseria gonorrhoeae strain FA1090

65.507

92

0.603
  recA Neisseria gonorrhoeae MS11

65.507

92

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.933

0.584
  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.467

0.581
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.933

0.581
  recA Acinetobacter baumannii D1279779

67.492

86.133

0.581
  recA Acinetobacter nosocomialis M2

67.183

86.133

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.823

93.6

0.579
  recA Vibrio cholerae strain A1552

61.823

93.6

0.579
  recA Acinetobacter baylyi ADP1

66.873

86.133

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.05

90.933

0.573
  recA Helicobacter pylori strain NCTC11637

61.471

90.667

0.557
  recA Helicobacter pylori 26695

61.471

90.667

0.557
  recA Streptococcus mutans UA159

60.997

90.933

0.555
  recA Streptococcus mitis NCTC 12261

59.942

92.533

0.555
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.933

0.552
  recA Streptococcus pneumoniae R6

59.654

92.533

0.552
  recA Streptococcus pneumoniae R36A

59.654

92.533

0.552
  recA Streptococcus pneumoniae Rx1

59.654

92.533

0.552
  recA Streptococcus pneumoniae D39

59.654

92.533

0.552
  recA Streptococcus pneumoniae TIGR4

59.654

92.533

0.552
  recA Streptococcus pyogenes NZ131

62.424

88

0.549
  recA Streptococcus thermophilus LMG 18311

60.058

91.467

0.549
  recA Streptococcus thermophilus LMD-9

60.058

91.467

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

87.733

0.544
  recA Streptococcus mitis SK321

61.329

88.267

0.541
  recA Glaesserella parasuis strain SC1401

62.422

85.867

0.536
  recA Lactococcus lactis subsp. cremoris KW2

60.121

88.267

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

85.333

0.507