Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PWF83_RS00555 Genome accession   NZ_CP118629
Coordinates   119375..120895 (-) Length   506 a.a.
NCBI ID   WP_275027419.1    Uniprot ID   -
Organism   Pantoea dispersa strain VWJL.P1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 114375..125895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWF83_RS00545 (PWF83_00545) hdfR 118065..118886 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  PWF83_RS00550 (PWF83_00550) - 119008..119346 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  PWF83_RS00555 (PWF83_00555) comM 119375..120895 (-) 1521 WP_275027419.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PWF83_RS00560 (PWF83_00560) ilvL 121224..121322 (+) 99 WP_071813600.1 ilv operon leader peptide -
  PWF83_RS00565 (PWF83_00565) ilvG 121472..123118 (+) 1647 WP_275027423.1 acetolactate synthase 2 catalytic subunit -
  PWF83_RS00570 (PWF83_00570) ilvM 123115..123372 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  PWF83_RS00575 (PWF83_00575) - 123391..124320 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54971.18 Da        Isoelectric Point: 7.8673

>NTDB_id=794075 PWF83_RS00555 WP_275027419.1 119375..120895(-) (comM) [Pantoea dispersa strain VWJL.P1]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRRRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNAQLSNPEIARDCMLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLAGERQI
TRQHLQEAVGYRSIDRLPIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=794075 PWF83_RS00555 WP_275027419.1 119375..120895(-) (comM) [Pantoea dispersa strain VWJL.P1]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
CGGTCTGCCAGCATTGACACTGGTTGGTCTGCCGGAAACTACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAATCTCGCGCCAGCTGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCACTGCAGGCCGGAC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGCGAAACGCTTGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCATTACCAGCCTGAAACGGTGCCGCACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATCACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGTACCGGTAAAACCATGCTGGCAACCCGATTGCCCGGCATTATGCCGCCGCTGGACGACCAG
GAGGCGCTGGAGTGCGCCGCGATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAGACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGCTGTATGCGCTGGTCGGCGGAGGATCACTGCCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAACGGGGTGCTGTTTCTAGATGAACTGCCCGAGTTTGAGCGCAAAGCGCTGGATGCGTTACGCGAGCCGATTGAGTCC
GGTGAAATCGCCATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCACGCTTTCAACTGATTGGTGCAATGAATCCCAG
CCCGACGGGTCATTATCAGGGAAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTTAGCCGGCTGTCTGGTC
CGTTTCTGGATCGCTTCGACCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCCCGCGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAGGTGAATGCGCA
GCTGTCGAATCCGGAGATCGCCCGTGATTGTATGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCGTGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGGTGAACGGCAGATT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACCGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.351

99.209

0.619
  comM Glaesserella parasuis strain SC1401

61.952

99.209

0.615
  comM Vibrio cholerae strain A1552

61.647

98.419

0.607
  comM Vibrio campbellii strain DS40M4

60.843

98.419

0.599
  comM Legionella pneumophila str. Paris

47.913

99.407

0.476
  comM Legionella pneumophila strain ERS1305867

47.913

99.407

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433