Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG382_RS09490 Genome accession   NZ_CP130722
Coordinates   2104446..2105573 (-) Length   375 a.a.
NCBI ID   WP_266749089.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2099446..2110573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS09465 (OG382_09465) - 2099969..2101561 (+) 1593 WP_266749094.1 MFS transporter -
  OG382_RS09470 (OG382_09470) - 2101906..2102055 (-) 150 WP_327349289.1 hypothetical protein -
  OG382_RS09475 - 2102121..2102363 (-) 243 WP_353962462.1 hydantoinase/oxoprolinase N-terminal domain-containing protein -
  OG382_RS09480 (OG382_09475) - 2102430..2103203 (-) 774 WP_266749092.1 IclR family transcriptional regulator -
  OG382_RS09485 (OG382_09480) recX 2103714..2104442 (-) 729 WP_266749090.1 recombination regulator RecX -
  OG382_RS09490 (OG382_09485) recA 2104446..2105573 (-) 1128 WP_266749089.1 recombinase RecA Machinery gene
  OG382_RS09495 (OG382_09490) - 2105791..2106069 (-) 279 WP_266749087.1 hypothetical protein -
  OG382_RS09500 (OG382_09495) - 2106482..2107720 (+) 1239 WP_266752508.1 hypothetical protein -
  OG382_RS09505 (OG382_09500) - 2107938..2108270 (+) 333 Protein_1895 class I SAM-dependent methyltransferase -
  OG382_RS09510 (OG382_09505) - 2108448..2108873 (-) 426 WP_266749086.1 nuclear transport factor 2 family protein -
  OG382_RS09515 (OG382_09510) - 2108958..2109524 (+) 567 WP_266749084.1 TetR/AcrR family transcriptional regulator -
  OG382_RS09520 (OG382_09515) - 2109671..2110483 (+) 813 WP_266749083.1 TnsA-like heteromeric transposase endonuclease subunit -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39589.02 Da        Isoelectric Point: 6.1802

>NTDB_id=787330 OG382_RS09490 WP_266749089.1 2104446..2105573(-) (recA) [Streptomyces sp. NBC_01238]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPDADAAETGADAAGGATAPADSAKSVPAPAGKSKPAKTAAAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=787330 OG382_RS09490 WP_266749089.1 2104446..2105573(-) (recA) [Streptomyces sp. NBC_01238]
ATGGCAGGAACCGACCGCGAGAAGGCGTTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCCATTGAGGTGATCCCCACCGGGTCGACTGCCCTCGACGTGGCTCTCGGCGTCG
GCGGCCTGCCGCGCGGCCGTGTGGTGGAGGTCTACGGACCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGCTCGGCGGCTCGGTGGCCTTCATCGACGCGGAGCACGCCCTCGATCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCGCTCGAAATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTGATCGTCATCGACTCCGTCGCGGCGCTCGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTCCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATTGGTGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGGG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGGATCGAGACGCTGAAGGACGGCACCGACGCCGTCGGAAAC
CGGACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGAAAGGCGGGCGCCTGGTACACGTACG
AGGGCGACCAGCTAGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGATCTCGCCAATGAGATCGAG
AAGAAGATCCTTGAGAAGCTGGGTGTCGGGGTAAGGCCGGATGCCGATGCCGCCGAGACGGGTGCGGATGCGGCGGGCGG
CGCCACGGCTCCGGCCGACAGCGCGAAGTCGGTGCCCGCTCCGGCCGGCAAGAGCAAGCCGGCCAAGACCGCGGCGGCCA
AGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Staphylococcus aureus strain ATCC 12600

65.875

89.867

0.592
  recA Pseudomonas stutzeri DSM 10701

67.385

86.667

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.933

0.584
  recA Ralstonia pseudosolanacearum GMI1000

69.968

83.467

0.584
  recA Neisseria gonorrhoeae strain FA1090

68.125

85.333

0.581
  recA Neisseria gonorrhoeae MS11

68.125

85.333

0.581
  recA Acinetobacter baumannii D1279779

67.492

86.133

0.581
  recA Acinetobacter baylyi ADP1

67.183

86.133

0.579
  recA Acinetobacter nosocomialis M2

67.183

86.133

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.235

90.667

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

86.133

0.573
  recA Vibrio cholerae strain A1552

66.563

86.133

0.573
  recA Streptococcus mitis SK321

60.58

92

0.557
  recA Streptococcus thermophilus LMG 18311

61.834

90.133

0.557
  recA Streptococcus mutans UA159

62.84

88.267

0.555
  recA Streptococcus pyogenes NZ131

63.03

88

0.555
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.933

0.552
  recA Glaesserella parasuis strain SC1401

61.062

90.4

0.552
  recA Streptococcus thermophilus LMD-9

62.236

88.267

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

87.733

0.549
  recA Streptococcus mitis NCTC 12261

61.934

88.267

0.547
  recA Helicobacter pylori strain NCTC11637

63.077

86.667

0.547
  recA Helicobacter pylori 26695

63.077

86.667

0.547
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.667

0.544
  recA Streptococcus pneumoniae R6

61.631

88.267

0.544
  recA Streptococcus pneumoniae TIGR4

61.631

88.267

0.544
  recA Streptococcus pneumoniae Rx1

61.631

88.267

0.544
  recA Streptococcus pneumoniae R36A

61.631

88.267

0.544
  recA Streptococcus pneumoniae D39

61.631

88.267

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

87.2

0.507