Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG202_RS35660 Genome accession   NZ_CP130714
Coordinates   8130158..8131285 (+) Length   375 a.a.
NCBI ID   WP_326576399.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8125158..8136285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG202_RS35635 (OG202_35670) - 8125846..8126613 (+) 768 WP_327732107.1 AzlC family ABC transporter permease -
  OG202_RS35640 (OG202_35675) - 8126610..8126918 (+) 309 WP_326576406.1 AzlD domain-containing protein -
  OG202_RS35645 (OG202_35680) - 8127080..8128024 (-) 945 WP_326576405.1 hypothetical protein -
  OG202_RS35650 (OG202_35685) - 8128104..8128298 (+) 195 WP_328224151.1 DUF3046 domain-containing protein -
  OG202_RS35655 (OG202_35690) - 8128393..8129862 (+) 1470 WP_328224152.1 AI-2E family transporter -
  OG202_RS35660 (OG202_35695) recA 8130158..8131285 (+) 1128 WP_326576399.1 recombinase RecA Machinery gene
  OG202_RS35665 (OG202_35700) recX 8131289..8132233 (+) 945 WP_328224153.1 recombination regulator RecX -
  OG202_RS35670 (OG202_35705) - 8132429..8132968 (-) 540 WP_328224154.1 cysteine dioxygenase -
  OG202_RS35675 - 8133053..8133199 (-) 147 WP_328224155.1 putative leader peptide -
  OG202_RS35680 (OG202_35710) - 8133231..8134931 (-) 1701 WP_328224156.1 FAD-dependent monooxygenase -
  OG202_RS35685 (OG202_35715) - 8135175..8135870 (-) 696 WP_326576391.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39806.25 Da        Isoelectric Point: 5.9157

>NTDB_id=786955 OG202_RS35660 WP_326576399.1 8130158..8131285(+) (recA) [Streptomyces sp. NBC_00310]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEEPTAEPGADAAVSATPADDAAKTVPASAAKTPKTRAAAAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=786955 OG202_RS35660 WP_326576399.1 8130158..8131285(+) (recA) [Streptomyces sp. NBC_00310]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAGTTCGGCAAGGGCGCGGTGAT
GCGCCTCGGCGAGCGGCCCAACGAGCCCATCGAGGTCATCCCCACCGGGTCGACCGCACTCGACGTCGCCCTCGGCGTCG
GCGGCCTGCCGCGTGGCCGAGTGGTGGAGGTGTACGGCCCGGAGTCCTCCGGCAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCGCAGAAGGCCGGCGGCCAGGTGGCCTTCGTGGACGCCGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGTGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCCGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGCCACGTGGGTCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGACTGGACATCCGCCGCATCGAGACACTGAAGGACGGCACCGACGCCGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGGCAGGG
CATCAGCCGCGAAGGCGGCCTGATCGACATGGGCGTGGAGAACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTGAAGGACAACCCGGACCTCGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTCCGGCCCGAGGAACCCACCGCAGAGCCGGGAGCGGACGCGGCGGTCTC
TGCCACCCCCGCGGACGACGCCGCCAAGACGGTGCCCGCGTCGGCTGCCAAGACCCCCAAGACCAGGGCCGCGGCGGCGA
AGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.698

91.733

0.603
  recA Neisseria gonorrhoeae MS11

66.667

89.6

0.597
  recA Neisseria gonorrhoeae strain FA1090

66.667

89.6

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.147

94.4

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.933

0.584
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.933

0.581
  recA Acinetobacter baumannii D1279779

67.183

86.133

0.579
  recA Acinetobacter baylyi ADP1

67.183

86.133

0.579
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.467

0.579
  recA Acinetobacter nosocomialis M2

66.873

86.133

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

86.133

0.568
  recA Vibrio cholerae strain A1552

65.944

86.133

0.568
  recA Streptococcus thermophilus LMG 18311

59.104

95.2

0.563
  recA Helicobacter pylori strain NCTC11637

61.471

90.667

0.557
  recA Helicobacter pylori 26695

61.471

90.667

0.557
  recA Streptococcus mutans UA159

62.538

88.267

0.552
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.933

0.552
  recA Streptococcus pyogenes NZ131

62.727

88

0.552
  recA Streptococcus thermophilus LMD-9

61.934

88.267

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.733

0.547
  recA Glaesserella parasuis strain SC1401

63.354

85.867

0.544
  recA Streptococcus mitis SK321

61.631

88.267

0.544
  recA Streptococcus mitis NCTC 12261

61.631

88.267

0.544
  recA Lactococcus lactis subsp. cremoris KW2

61.631

88.267

0.544
  recA Streptococcus pneumoniae R6

61.329

88.267

0.541
  recA Streptococcus pneumoniae R36A

61.329

88.267

0.541
  recA Streptococcus pneumoniae Rx1

61.329

88.267

0.541
  recA Streptococcus pneumoniae D39

61.329

88.267

0.541
  recA Streptococcus pneumoniae TIGR4

61.329

88.267

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

85.333

0.504