Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q3Y56_RS26370 Genome accession   NZ_CP130713
Coordinates   6046129..6047262 (+) Length   377 a.a.
NCBI ID   WP_304464297.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6041129..6052262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS26345 (Q3Y56_26345) - 6041429..6042361 (-) 933 WP_304464293.1 hypothetical protein -
  Q3Y56_RS26350 (Q3Y56_26350) - 6042578..6043360 (+) 783 WP_304464294.1 TetR-like C-terminal domain-containing protein -
  Q3Y56_RS26355 (Q3Y56_26355) - 6043382..6044323 (-) 942 WP_304464295.1 NAD-dependent epimerase/dehydratase family protein -
  Q3Y56_RS26360 (Q3Y56_26360) - 6044481..6044675 (+) 195 WP_304464296.1 DUF3046 domain-containing protein -
  Q3Y56_RS26365 (Q3Y56_26365) - 6044782..6045948 (+) 1167 WP_304465811.1 AI-2E family transporter -
  Q3Y56_RS26370 (Q3Y56_26370) recA 6046129..6047262 (+) 1134 WP_304464297.1 recombinase RecA Machinery gene
  Q3Y56_RS26375 (Q3Y56_26375) recX 6047266..6047970 (+) 705 WP_304464298.1 recombination regulator RecX -
  Q3Y56_RS26380 (Q3Y56_26380) - 6048217..6048597 (-) 381 WP_304464299.1 rhodanese-like domain-containing protein -
  Q3Y56_RS26385 (Q3Y56_26385) - 6048594..6049220 (-) 627 WP_304464300.1 cysteine dioxygenase -
  Q3Y56_RS33600 - 6049279..6049368 (-) 90 WP_369696806.1 putative leader peptide -
  Q3Y56_RS26390 (Q3Y56_26390) - 6049453..6051252 (-) 1800 WP_304464301.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39563.01 Da        Isoelectric Point: 6.8978

>NTDB_id=786879 Q3Y56_RS26370 WP_304464297.1 6046129..6047262(+) (recA) [Streptomyces sp. XD-27]
MAGTDREKALDAALAQIERQFGKGAVMRMGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRAGGTVAFVDAEHALDPDYAQKLGVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGIGVKPEAPAAEPGADAAGAAGAAAAAPVKAAPATAKTGAKATKAAAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=786879 Q3Y56_RS26370 WP_304464297.1 6046129..6047262(+) (recA) [Streptomyces sp. XD-27]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCCGTGAT
GCGCATGGGCGAGCGGCCGAACGAGCCCATCGAGGTCATCCCCACCGGGTCGACCGCTCTGGATGTCGCCCTCGGCGTCG
GCGGGCTGCCGCGCGGCCGTGTCGTGGAGGTCTACGGCCCGGAGTCCTCCGGTAAGACGACCCTGACCCTGCACGCGGTG
GCCAACGCCCAGCGCGCGGGCGGCACGGTGGCCTTCGTGGACGCCGAGCACGCGCTCGACCCCGACTACGCCCAGAAGCT
CGGCGTGGACACCGACTCCCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCACGGACATGCTGATCC
GCTCCGGCGCGCTCGACCTCATCGTCATCGACTCCGTGGCCGCGCTGGTGCCGCGCGCGGAGATCGAGGGTGAGATGGGC
GACTCGCACGTCGGCCTCCAGGCCCGGCTGATGAGCCAGGCGCTGCGGAAGATCACCGGTGCGCTGAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGGTCGGCGTCATGTTCGGCTCCCCGGAGACGACGACCGGTGGCCGCG
CGCTGAAGTTCTACGCCTCCGTGCGGCTGGACATCCGCCGCATCGAGACCCTCAAGGACGGCACCGACGCGGTCGGTAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTCGAGCACGGCTTCATCCGCAAGTCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCATCGGCGTCAAGCCCGAGGCCCCGGCCGCCGAGCCCGGTGCCGACGCCGCCGGCGC
GGCCGGTGCCGCGGCCGCCGCACCGGTGAAGGCCGCGCCCGCCACGGCCAAGACCGGAGCGAAGGCGACCAAGGCCGCCG
CGGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.959

90.716

0.607
  recA Neisseria gonorrhoeae MS11

68.536

85.146

0.584
  recA Neisseria gonorrhoeae strain FA1090

68.536

85.146

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

86.472

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

64.97

88.594

0.576
  recA Ralstonia pseudosolanacearum GMI1000

69.01

83.024

0.573
  recA Staphylococcus aureus strain ATCC 12600

66.258

86.472

0.573
  recA Vibrio cholerae strain A1552

65.152

87.533

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.152

87.533

0.57
  recA Acinetobacter baylyi ADP1

65.325

85.676

0.56
  recA Acinetobacter baumannii D1279779

65.325

85.676

0.56
  recA Acinetobacter nosocomialis M2

65.015

85.676

0.557
  recA Streptococcus mutans UA159

62.236

87.798

0.546
  recA Streptococcus pyogenes NZ131

62.424

87.533

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.268

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

86.472

0.544
  recA Streptococcus thermophilus LMD-9

61.631

87.798

0.541
  recA Streptococcus thermophilus LMG 18311

61.631

87.798

0.541
  recA Lactococcus lactis subsp. cremoris KW2

61.631

87.798

0.541
  recA Streptococcus mitis NCTC 12261

61.329

87.798

0.538
  recA Streptococcus mitis SK321

61.329

87.798

0.538
  recA Glaesserella parasuis strain SC1401

63.043

85.411

0.538
  recA Helicobacter pylori strain NCTC11637

62.154

86.207

0.536
  recA Helicobacter pylori 26695

62.154

86.207

0.536
  recA Streptococcus pneumoniae TIGR4

61.027

87.798

0.536
  recA Streptococcus pneumoniae R6

61.027

87.798

0.536
  recA Streptococcus pneumoniae D39

61.027

87.798

0.536
  recA Streptococcus pneumoniae Rx1

61.027

87.798

0.536
  recA Streptococcus pneumoniae R36A

61.027

87.798

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.438

84.881

0.496