Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   Q3Y68_RS09415 Genome accession   NZ_CP130681
Coordinates   2169970..2171094 (-) Length   374 a.a.
NCBI ID   WP_165285795.1    Uniprot ID   A0ABW8BNF6
Organism   Streptomyces sp. HUAS CX7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2164970..2176094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS09390 (Q3Y68_09390) - 2165101..2165988 (+) 888 WP_212731384.1 amino acid ABC transporter permease -
  Q3Y68_RS09395 (Q3Y68_09395) - 2166175..2167797 (+) 1623 WP_233645525.1 FAD-dependent monooxygenase -
  Q3Y68_RS36935 - 2167927..2167998 (+) 72 WP_309544753.1 putative leader peptide -
  Q3Y68_RS09400 (Q3Y68_09400) - 2168076..2168639 (+) 564 WP_233645526.1 cysteine dioxygenase -
  Q3Y68_RS09405 (Q3Y68_09405) - 2168636..2169052 (+) 417 WP_233645527.1 rhodanese-like domain-containing protein -
  Q3Y68_RS09410 (Q3Y68_09410) recX 2169184..2169966 (-) 783 WP_125628540.1 recombination regulator RecX -
  Q3Y68_RS09415 (Q3Y68_09415) recA 2169970..2171094 (-) 1125 WP_165285795.1 recombinase RecA Machinery gene
  Q3Y68_RS09420 (Q3Y68_09420) - 2171373..2171573 (+) 201 WP_102932691.1 type II toxin-antitoxin system VapB family antitoxin -
  Q3Y68_RS09425 (Q3Y68_09425) - 2171599..2172882 (-) 1284 WP_233645528.1 AI-2E family transporter -
  Q3Y68_RS09430 (Q3Y68_09430) - 2172943..2173137 (-) 195 WP_031037914.1 DUF3046 domain-containing protein -
  Q3Y68_RS09435 (Q3Y68_09435) - 2173219..2174187 (+) 969 WP_233645529.1 hypothetical protein -
  Q3Y68_RS09440 (Q3Y68_09440) - 2174263..2174571 (-) 309 WP_165285798.1 AzlD domain-containing protein -
  Q3Y68_RS09445 (Q3Y68_09445) - 2174568..2175320 (-) 753 WP_233645530.1 AzlC family ABC transporter permease -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 39658.18 Da        Isoelectric Point: 6.1816

>NTDB_id=786530 Q3Y68_RS09415 WP_165285795.1 2169970..2171094(-) (recA) [Streptomyces sp. HUAS CX7]
MAGTDREKALDAALAQIERQFGKGAVMRMGERSMEPIEVISTGSTALDVALGVGGIPRGRVVEIYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAVGN
RTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEEPATEPGADAAPAATADAAPAVPAPTTAKATKSKAAAAKS

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=786530 Q3Y68_RS09415 WP_165285795.1 2169970..2171094(-) (recA) [Streptomyces sp. HUAS CX7]
ATGGCAGGAACCGACCGCGAGAAGGCCCTGGACGCCGCGCTCGCACAGATTGAACGGCAGTTCGGCAAGGGCGCGGTCAT
GCGCATGGGCGAGCGGTCGATGGAGCCCATCGAGGTCATCTCGACCGGGTCGACCGCGCTCGACGTGGCCCTCGGCGTCG
GCGGCATCCCGCGCGGCCGGGTCGTGGAGATCTACGGCCCCGAGTCCTCGGGCAAGACGACCCTGACCCTGCACGCCGTG
GCGAACGCGCAGAAGGCCGGCGGTCAGGTCGCGTTCGTGGACGCCGAGCACGCCCTCGACCCCGAGTACGCCAAGAAGCT
CGGCGTAGACATCGACAACCTGATCCTCTCCCAGCCGGACAACGGTGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCTGTCGCCGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGCCACGTTGGTCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGCATCGACATCCGCCGCATCGAGACGCTGAAGGACGGCACGGAGGCGGTCGGCAAC
CGCACCCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGTGGCCTGATCGACATGGGCGTCGAGCACGGCTTCGTCCGCAAGGCCGGTGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTCAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTGCGTCCCGAGGAGCCGGCCACCGAGCCCGGCGCGGACGCCGCCCCCGC
CGCCACGGCCGACGCCGCACCCGCGGTGCCCGCGCCCACGACCGCCAAGGCCACCAAGTCCAAGGCCGCGGCAGCCAAGA
GCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

65.797

92.246

0.607

  recA Neisseria gonorrhoeae MS11

65.797

92.246

0.607

  recA Pseudomonas stutzeri DSM 10701

68

86.898

0.591

  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.69

0.583

  recA Latilactobacillus sakei subsp. sakei 23K

63.93

91.176

0.583

  recA Staphylococcus aureus strain ATCC 12600

66.871

87.166

0.583

  recA Vibrio cholerae strain A1552

65.455

88.235

0.578

  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.455

88.235

0.578

  recA Acinetobacter baylyi ADP1

66.873

86.364

0.578

  recA Acinetobacter baumannii D1279779

66.873

86.364

0.578

  recA Acinetobacter nosocomialis M2

66.563

86.364

0.575

  recA Bacillus subtilis subsp. subtilis str. 168

65.644

87.166

0.572

  recA Helicobacter pylori 26695

62.059

90.909

0.564

  recA Helicobacter pylori strain NCTC11637

62.059

90.909

0.564

  recA Streptococcus mutans UA159

61.877

91.176

0.564

  recA Streptococcus pyogenes NZ131

62.84

88.503

0.556

  recA Streptococcus thermophilus LMG 18311

60.526

91.444

0.553

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

87.166

0.551

  recA Streptococcus thermophilus LMD-9

61.747

88.77

0.548

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.968

0.548

  recA Streptococcus mitis NCTC 12261

61.446

88.77

0.545

  recA Streptococcus mitis SK321

61.446

88.77

0.545

  recA Streptococcus pneumoniae TIGR4

61.631

88.503

0.545

  recA Streptococcus pneumoniae R36A

61.631

88.503

0.545

  recA Streptococcus pneumoniae Rx1

61.631

88.503

0.545

  recA Streptococcus pneumoniae D39

61.631

88.503

0.545

  recA Streptococcus pneumoniae R6

61.631

88.503

0.545

  recA Lactococcus lactis subsp. cremoris KW2

61.329

88.503

0.543

  recA Glaesserella parasuis strain SC1401

62.733

86.096

0.54

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

85.561

0.508