Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   Q2T91_RS23750 Genome accession   NZ_CP130500
Coordinates   3334907..3335965 (-) Length   352 a.a.
NCBI ID   WP_011000510.1    Uniprot ID   Q8Y1Y6
Organism   Ralstonia pseudosolanacearum strain DG-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3329907..3340965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T91_RS23725 (Q2T91_23715) - 3330385..3331083 (-) 699 WP_058908374.1 TerC family protein -
  Q2T91_RS23730 (Q2T91_23720) sucD 3331233..3332114 (-) 882 WP_011000514.1 succinate--CoA ligase subunit alpha -
  Q2T91_RS23735 (Q2T91_23725) sucC 3332199..3333365 (-) 1167 WP_011000513.1 ADP-forming succinate--CoA ligase subunit beta -
  Q2T91_RS23740 (Q2T91_23730) - 3333432..3334058 (-) 627 WP_029240215.1 DUF2889 domain-containing protein -
  Q2T91_RS23745 (Q2T91_23735) recX 3334333..3334812 (-) 480 WP_020831287.1 recombination regulator RecX -
  Q2T91_RS23750 (Q2T91_23740) recA 3334907..3335965 (-) 1059 WP_011000510.1 recombinase RecA Machinery gene
  Q2T91_RS23755 (Q2T91_23745) - 3336242..3336940 (+) 699 WP_011000509.1 response regulator transcription factor -
  Q2T91_RS23760 (Q2T91_23750) - 3336933..3338474 (+) 1542 WP_019717565.1 sensor histidine kinase -
  Q2T91_RS23765 (Q2T91_23755) - 3338471..3338788 (+) 318 WP_028860210.1 sodium/substrate symporter small subunit -
  Q2T91_RS23770 (Q2T91_23760) - 3338987..3340690 (+) 1704 WP_016723983.1 MFS transporter -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 37658.31 Da        Isoelectric Point: 4.9116

>NTDB_id=782341 Q2T91_RS23750 WP_011000510.1 3334907..3335965(-) (recA) [Ralstonia pseudosolanacearum strain DG-3]
MEDGKKAASMSAEKQKALAAALAQIEKQFGKGSIMKMGDAEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETKVKVVKNKVAPPFREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLREN
AELAREIENKVREHLGVTPMGAVTLAEEVEED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=782341 Q2T91_RS23750 WP_011000510.1 3334907..3335965(-) (recA) [Ralstonia pseudosolanacearum strain DG-3]
ATGGAAGACGGCAAGAAGGCAGCCTCGATGAGCGCAGAAAAGCAGAAGGCGCTGGCTGCCGCGCTCGCGCAGATCGAAAA
GCAGTTCGGCAAGGGCTCGATCATGAAGATGGGCGACGCCGAGGTGGAGCCGGTCCAGGTTGTGTCCACCGGCTCGCTGG
GTCTGGACGTCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGTCGCGTGGTCGAGATCTACGGCCCCGAATCGTCCGGCAAG
ACCACGCTGACGCTGCAGGTGGTCGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCTTTCATCGACGCCGAGCATGCGCT
GGACGTCACCTATGCCGACAAGCTCGGCGTGAAGGTGCCGGACCTGTTGATCTCCCAACCGGACACCGGTGAGCAGGCGC
TGGAAATCGCCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACGCGCTGCCCGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCGC
CGGAAACCACCACGGGCGGCAATGCGCTCAAGTTCTACGCTTCGGTGCGTCTGGACATCCGCCGCATCGGCTCGATCAAG
AAGGGCGATGAGGTGGTCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCCGCGAGGCGAT
CTTCGACATCCTCTACGGTGCGGGCGTGTCGCGCGAAGGCGAGATCATCGATCTGGGCGTGGAAGCCAAGGTGGTCGAGA
AATCCGGCGCCTGGTACAGCTACAACGGCGAGCGCATCGGCCAGGGCCGTGACAACTGCCGCGAATTCCTGCGCGAAAAC
GCCGAACTGGCCCGCGAGATCGAAAACAAGGTCCGCGAACACCTGGGCGTGACGCCGATGGGCGCCGTCACGCTGGCCGA
GGAAGTCGAGGAAGATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8Y1Y6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

100

100

1

  recA Pseudomonas stutzeri DSM 10701

72.303

97.443

0.705

  recA Neisseria gonorrhoeae strain FA1090

74.468

93.466

0.696

  recA Neisseria gonorrhoeae MS11

74.468

93.466

0.696

  recA Acinetobacter baumannii D1279779

70.058

97.727

0.685

  recA Acinetobacter nosocomialis M2

70.262

97.443

0.685

  recA Acinetobacter baylyi ADP1

69.679

97.443

0.679

  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.822

96.023

0.67

  recA Vibrio cholerae strain A1552

69.822

96.023

0.67

  recA Glaesserella parasuis strain SC1401

70.031

92.898

0.651

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.286

95.455

0.614

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

97.443

0.614

  recA Bacillus subtilis subsp. subtilis str. 168

64.759

94.318

0.611

  recA Staphylococcus aureus strain ATCC 12600

64.134

93.466

0.599

  recA Helicobacter pylori 26695

63.83

93.466

0.597

  recA Helicobacter pylori strain NCTC11637

63.526

93.466

0.594

  recA Latilactobacillus sakei subsp. sakei 23K

63.804

92.614

0.591

  recA Lactococcus lactis subsp. cremoris KW2

60.303

93.75

0.565

  recA Streptococcus pneumoniae Rx1

59.697

93.75

0.56

  recA Streptococcus pneumoniae TIGR4

59.697

93.75

0.56

  recA Streptococcus pneumoniae R6

59.697

93.75

0.56

  recA Streptococcus pneumoniae D39

59.697

93.75

0.56

  recA Streptococcus pneumoniae R36A

59.697

93.75

0.56

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

92.614

0.557

  recA Streptococcus mitis SK321

59.394

93.75

0.557

  recA Streptococcus mitis NCTC 12261

59.394

93.75

0.557

  recA Streptococcus thermophilus LMD-9

57.31

97.159

0.557

  recA Streptococcus thermophilus LMG 18311

57.31

97.159

0.557

  recA Streptococcus mutans UA159

59.271

93.466

0.554

  recA Streptococcus pyogenes NZ131

58.537

93.182

0.545