Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QT196_RS29370 Genome accession   NZ_CP129126
Coordinates   6655487..6656605 (+) Length   372 a.a.
NCBI ID   WP_168481673.1    Uniprot ID   -
Organism   Streptomyces sp. P9-2B-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6650487..6661605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QT196_RS29345 (QT196_29345) - 6651113..6651421 (+) 309 WP_168481671.1 AzlD domain-containing protein -
  QT196_RS29350 (QT196_29350) - 6651562..6652524 (+) 963 WP_168481483.1 IS481 family transposase -
  QT196_RS29355 (QT196_29355) - 6652698..6653618 (-) 921 WP_168481672.1 hypothetical protein -
  QT196_RS29360 (QT196_29360) - 6653696..6653890 (+) 195 WP_042159897.1 DUF3046 domain-containing protein -
  QT196_RS29365 (QT196_29365) - 6654072..6655244 (+) 1173 WP_168484057.1 AI-2E family transporter -
  QT196_RS29370 (QT196_29370) recA 6655487..6656605 (+) 1119 WP_168481673.1 recombinase RecA Machinery gene
  QT196_RS29375 (QT196_29375) recX 6656612..6657268 (+) 657 WP_168481674.1 recombination regulator RecX -
  QT196_RS29380 (QT196_29380) - 6657503..6657883 (-) 381 WP_290355998.1 rhodanese-like domain-containing protein -
  QT196_RS29385 (QT196_29385) - 6657880..6658422 (-) 543 WP_168481676.1 cysteine dioxygenase -
  QT196_RS39415 - 6658502..6658588 (-) 87 WP_311044721.1 putative leader peptide -
  QT196_RS29390 (QT196_29390) - 6658581..6660374 (-) 1794 WP_168481677.1 FAD-dependent monooxygenase -
  QT196_RS29395 (QT196_29395) - 6660558..6661493 (-) 936 WP_168481678.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39265.65 Da        Isoelectric Point: 6.5235

>NTDB_id=777216 QT196_RS29370 WP_168481673.1 6655487..6656605(+) (recA) [Streptomyces sp. P9-2B-2]
MAGTDREKALDAALAQIERQFGKGAVMRMGERPNEPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVSPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGIGVQPQAPAAEPGTDAAVAAAEPAAAPAPAAKGAKGSKATAAKS

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=777216 QT196_RS29370 WP_168481673.1 6655487..6656605(+) (recA) [Streptomyces sp. P9-2B-2]
ATGGCAGGCACCGACCGCGAGAAGGCGCTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCCGTGAT
GCGCATGGGGGAGCGGCCGAACGAACCCATCGAGGTCATCCCCACCGGCTCCACCGCGCTTGATGTCGCGCTCGGGGTCG
GCGGTATCCCCCGCGGCCGCGTGGTCGAGGTCTACGGCCCGGAGTCCTCCGGTAAGACGACCCTGACCCTGCACGCCGTC
GCGAACGCCCAGAAGGCCGGCGGCTCCGTCGCGTTCATCGACGCCGAGCACGCGCTCGACCCGGAGTACGCCAAGAAGCT
CGGCGTGGACACCGACTCCCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCACTGGAGATCACGGACATGCTGGTCC
GCTCCGGTGCGCTCGACCTCATCGTGATCGACTCCGTCGCCGCCCTGGTGCCGCGGGCCGAGATCGAGGGCGAGATGGGC
GACTCCCACGTCGGCCTCCAGGCCCGGCTGATGAGCCAGGCGCTGCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGTG
CGCTGAAGTTCTATGCCTCGGTGCGTCTCGACATCCGCCGCATCGAAACCCTCAAGGACGGCACGGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCCCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCATCCGCAAGTCCGGCGCTTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCGGATCTCGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTCGGCATCGGCGTGCAGCCGCAGGCCCCGGCGGCGGAGCCCGGCACGGACGCCGCGGTGGC
GGCGGCCGAACCGGCTGCGGCTCCGGCACCGGCGGCCAAGGGCGCCAAGGGCTCCAAGGCCACCGCGGCCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

67.485

87.634

0.591
  recA Neisseria gonorrhoeae MS11

67.485

87.634

0.591
  recA Pseudomonas stutzeri DSM 10701

67.492

86.828

0.586
  recA Vibrio cholerae strain A1552

61.823

94.355

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.823

94.355

0.583
  recA Ralstonia pseudosolanacearum GMI1000

69.01

84.14

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

87.634

0.581
  recA Staphylococcus aureus strain ATCC 12600

65.951

87.634

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

64.371

89.785

0.578
  recA Acinetobacter baumannii D1279779

65.325

86.828

0.567
  recA Acinetobacter baylyi ADP1

65.325

86.828

0.567
  recA Acinetobacter nosocomialis M2

65.015

86.828

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

87.634

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

88.441

0.554
  recA Streptococcus mutans UA159

61.934

88.978

0.551
  recA Streptococcus pyogenes NZ131

62.121

88.71

0.551
  recA Glaesserella parasuis strain SC1401

63.354

86.559

0.548
  recA Helicobacter pylori strain NCTC11637

62.769

87.366

0.548
  recA Helicobacter pylori 26695

62.769

87.366

0.548
  recA Lactococcus lactis subsp. cremoris KW2

61.631

88.978

0.548
  recA Streptococcus thermophilus LMD-9

61.329

88.978

0.546
  recA Streptococcus thermophilus LMG 18311

61.329

88.978

0.546
  recA Streptococcus mitis NCTC 12261

61.027

88.978

0.543
  recA Streptococcus mitis SK321

61.027

88.978

0.543
  recA Streptococcus pneumoniae R6

60.725

88.978

0.54
  recA Streptococcus pneumoniae R36A

60.725

88.978

0.54
  recA Streptococcus pneumoniae Rx1

60.725

88.978

0.54
  recA Streptococcus pneumoniae D39

60.725

88.978

0.54
  recA Streptococcus pneumoniae TIGR4

60.725

88.978

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

86.022

0.511