Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PED36_RS09550 Genome accession   NZ_CP115661
Coordinates   2099443..2100078 (+) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas putida strain PD689_delTT1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094443..2105078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PED36_RS09530 (PED36_09530) - 2094752..2095684 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  PED36_RS09535 (PED36_09535) - 2095681..2096460 (+) 780 WP_010952923.1 ABC transporter permease -
  PED36_RS09540 (PED36_09540) - 2096470..2096976 (-) 507 Protein_1862 DUF2062 domain-containing protein -
  PED36_RS09545 (PED36_09545) comA 2097119..2099332 (+) 2214 WP_010952924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PED36_RS09550 (PED36_09550) exbB 2099443..2100078 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PED36_RS09555 (PED36_09555) - 2100075..2100509 (+) 435 WP_010952926.1 ExbD/TolR family protein -
  PED36_RS09560 (PED36_09560) lpxK 2100509..2101510 (+) 1002 WP_049586866.1 tetraacyldisaccharide 4'-kinase -
  PED36_RS09565 (PED36_09565) - 2101555..2101740 (+) 186 WP_003247142.1 Trm112 family protein -
  PED36_RS09570 (PED36_09570) kdsB 2101737..2102501 (+) 765 WP_010952928.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PED36_RS09575 (PED36_09575) - 2102501..2102965 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  PED36_RS09580 (PED36_09580) murB 2102962..2103981 (+) 1020 WP_049586861.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=773329 PED36_RS09550 WP_026031862.1 2099443..2100078(+) (exbB) [Pseudomonas putida strain PD689_delTT1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=773329 PED36_RS09550 WP_026031862.1 2099443..2100078(+) (exbB) [Pseudomonas putida strain PD689_delTT1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGTCTGCTGGGCACCGTGCTAGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82