Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OK783_RS00500 Genome accession   NZ_CP115654
Coordinates   106587..107186 (-) Length   199 a.a.
NCBI ID   WP_010356666.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101587..112186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS00485 (OK783_00485) pilQ 103186..105357 (-) 2172 WP_003698035.1 type IV pilus secretin PilQ Machinery gene
  OK783_RS00490 (OK783_00490) pilP 105376..105921 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  OK783_RS00495 (OK783_00495) - 105939..106586 (-) 648 WP_010356664.1 type 4a pilus biogenesis protein PilO -
  OK783_RS00500 (OK783_00500) pilN 106587..107186 (-) 600 WP_010356666.1 PilN domain-containing protein Machinery gene
  OK783_RS00505 (OK783_00505) pilM 107189..108304 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  OK783_RS00510 (OK783_00510) - 108456..110852 (+) 2397 WP_003687357.1 penicillin-binding protein 1A -
  OK783_RS00515 (OK783_00515) yihA 110972..111601 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22255.59 Da        Isoelectric Point: 9.7317

>NTDB_id=773260 OK783_RS00500 WP_010356666.1 106587..107186(-) (pilN) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=773260 OK783_RS00500 WP_010356666.1 106587..107186(-) (pilN) [Neisseria gonorrhoeae strain FA1090 N-1-60]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.99

100

0.98