Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QOM21_RS10285 Genome accession   NZ_CP127172
Coordinates   2327582..2328703 (-) Length   373 a.a.
NCBI ID   WP_407549529.1    Uniprot ID   -
Organism   Streptomyces sp. Pv4-95 voucher LV 740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2322582..2333703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM21_RS10265 (QOM21_10275) - 2323566..2325404 (+) 1839 WP_407549522.1 FAD-dependent monooxygenase -
  QOM21_RS10270 (QOM21_10280) - 2325559..2326101 (+) 543 WP_407549524.1 cysteine dioxygenase -
  QOM21_RS10275 (QOM21_10285) - 2326292..2326669 (+) 378 WP_407549525.1 rhodanese-like domain-containing protein -
  QOM21_RS10280 (QOM21_10290) recX 2326901..2327575 (-) 675 WP_407549527.1 recombination regulator RecX -
  QOM21_RS10285 (QOM21_10295) recA 2327582..2328703 (-) 1122 WP_407549529.1 recombinase RecA Machinery gene
  QOM21_RS10290 (QOM21_10300) - 2328940..2330253 (-) 1314 WP_407555627.1 AI-2E family transporter -
  QOM21_RS10295 (QOM21_10305) - 2330481..2330675 (-) 195 WP_407549530.1 DUF3046 domain-containing protein -
  QOM21_RS10300 (QOM21_10310) - 2330754..2331677 (+) 924 WP_407549532.1 hypothetical protein -
  QOM21_RS10305 (QOM21_10315) - 2331715..2332023 (-) 309 WP_407549534.1 AzlD domain-containing protein -
  QOM21_RS10310 (QOM21_10320) - 2332020..2332832 (-) 813 WP_407549536.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39360.83 Da        Isoelectric Point: 6.5242

>NTDB_id=771350 QOM21_RS10285 WP_407549529.1 2327582..2328703(-) (recA) [Streptomyces sp. Pv4-95 voucher LV 740]
MAGTDREKALDAALAQIERQFGKGAVMRMGERPNEPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQLGQGKENARNFLKDNPDLANEVE
KKIKEKLGIGVKPQEPAAEPGADAAGVVADPAAAVPAPAAKAAKGSKATAAKS

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=771350 QOM21_RS10285 WP_407549529.1 2327582..2328703(-) (recA) [Streptomyces sp. Pv4-95 voucher LV 740]
ATGGCAGGCACTGACCGCGAGAAGGCGCTCGACGCTGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCCGTGAT
GCGCATGGGGGAGCGGCCCAACGAACCCATCGAGGTCATCCCCACCGGCTCGACCGCGCTCGACGTGGCGCTGGGCGTCG
GCGGCATCCCCCGCGGCCGTGTGGTGGAGGTCTACGGTCCGGAGTCCTCCGGTAAGACGACCCTCACGCTGCACGCCGTG
GCGAACGCCCAGAAGGCCGGCGGCTCCGTGGCGTTCATCGACGCCGAGCACGCACTCGACCCCGAGTACGCCAAGAAGCT
CGGTGTGGACACCGACGCCCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCACGGACATGCTGGTCC
GGTCCGGGGCGCTCGACCTCATCGTCATCGACTCCGTCGCCGCCCTGGTGCCGCGGGCCGAGATCGAGGGCGAAATGGGC
GACTCCCACGTCGGCCTCCAGGCCCGGCTCATGAGCCAGGCGCTGCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGCG
CGCTGAAGTTCTACGCCTCCGTGCGGCTCGACATCCGCCGCATCGAGACCCTCAAGGACGGCACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCACCGCCCTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCATCCGCAAGTCCGGCGCTTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCGGACCTCGCCAACGAGGTCGAG
AAGAAGATCAAGGAGAAGCTGGGCATCGGCGTGAAGCCGCAGGAACCTGCAGCGGAGCCCGGCGCGGACGCCGCGGGGGT
GGTGGCCGACCCGGCCGCCGCGGTTCCGGCACCGGCGGCCAAGGCCGCCAAGGGTTCCAAGGCCACCGCGGCCAAAAGCT
AG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.497

91.689

0.601
  recA Neisseria gonorrhoeae MS11

68.224

86.059

0.587
  recA Neisseria gonorrhoeae strain FA1090

68.224

86.059

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

65.075

89.812

0.584
  recA Ralstonia pseudosolanacearum GMI1000

69.01

83.914

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

87.399

0.579
  recA Staphylococcus aureus strain ATCC 12600

65.951

87.399

0.576
  recA Vibrio cholerae strain A1552

65.635

86.595

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.635

86.595

0.568
  recA Acinetobacter baumannii D1279779

65.325

86.595

0.566
  recA Acinetobacter baylyi ADP1

65.325

86.595

0.566
  recA Acinetobacter nosocomialis M2

65.015

86.595

0.563
  recA Helicobacter pylori strain NCTC11637

61.471

91.153

0.56
  recA Helicobacter pylori 26695

61.471

91.153

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

87.399

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

88.204

0.555
  recA Streptococcus mutans UA159

61.934

88.74

0.55
  recA Glaesserella parasuis strain SC1401

63.665

86.327

0.55
  recA Streptococcus pyogenes NZ131

62.121

88.472

0.55
  recA Lactococcus lactis subsp. cremoris KW2

61.631

88.74

0.547
  recA Streptococcus thermophilus LMG 18311

61.329

88.74

0.544
  recA Streptococcus thermophilus LMD-9

61.329

88.74

0.544
  recA Streptococcus mitis NCTC 12261

61.027

88.74

0.542
  recA Streptococcus mitis SK321

61.027

88.74

0.542
  recA Streptococcus pneumoniae Rx1

60.725

88.74

0.539
  recA Streptococcus pneumoniae R36A

60.725

88.74

0.539
  recA Streptococcus pneumoniae D39

60.725

88.74

0.539
  recA Streptococcus pneumoniae R6

60.725

88.74

0.539
  recA Streptococcus pneumoniae TIGR4

60.725

88.74

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

85.791

0.509