Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QPK52_RS25245 Genome accession   NZ_CP127170
Coordinates   5619652..5620713 (+) Length   353 a.a.
NCBI ID   WP_410539778.1    Uniprot ID   -
Organism   Streptomyces sp. KL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5614652..5625713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK52_RS25215 - 5614746..5615822 (-) 1077 WP_410539772.1 protein kinase family protein -
  QPK52_RS25220 - 5616095..5616664 (+) 570 WP_410539773.1 snapalysin family zinc-dependent metalloprotease -
  QPK52_RS25225 - 5616838..5617152 (-) 315 WP_410539774.1 hypothetical protein -
  QPK52_RS25230 - 5617512..5618459 (+) 948 WP_410539775.1 ATP-binding protein -
  QPK52_RS25235 - 5618456..5618998 (+) 543 WP_410539776.1 hypothetical protein -
  QPK52_RS25240 - 5619056..5619538 (+) 483 WP_410539777.1 single-stranded DNA-binding protein -
  QPK52_RS25245 recA 5619652..5620713 (+) 1062 WP_410539778.1 recombinase RecA Machinery gene
  QPK52_RS25250 - 5620840..5622474 (-) 1635 WP_410540476.1 MDR family MFS transporter -
  QPK52_RS25255 - 5622640..5623332 (-) 693 WP_410539779.1 TetR/AcrR family transcriptional regulator -
  QPK52_RS25260 - 5623487..5624128 (+) 642 WP_410539780.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38137.40 Da        Isoelectric Point: 5.2017

>NTDB_id=771341 QPK52_RS25245 WP_410539778.1 5619652..5620713(+) (recA) [Streptomyces sp. KL2]
MKEQDREKALDAALAQIERQFGKGAVMRLGDEVWDPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRMGGTVAFVDAEHALDPEYAKRLGVDVDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALSQSKTTTVFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAVGN
RTRVKVVKNKVAPPFKQAEFDILYGIGISREGGLIDMGVEHGFIRKSGAWYTYEGDQLGQGKENARNFLRDNPDLANEIE
KKIKEKLGIGTRPEAEPGPETGQDAIRTLAAGF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=771341 QPK52_RS25245 WP_410539778.1 5619652..5620713(+) (recA) [Streptomyces sp. KL2]
GTGAAGGAACAGGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAGTTCGGCAAGGGCGCCGTGAT
GCGCCTGGGCGACGAGGTGTGGGATCCCATCGAGGTGATCCCGACCGGGTCGACCGCCCTGGACGTCGCCCTGGGCGTGG
GCGGCCTGCCGCGCGGCCGGGTGGTGGAGGTCTACGGGCCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCACGCGGTG
GCCAACGCCCAGCGGATGGGCGGCACGGTCGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAGTACGCCAAGCGGCT
GGGCGTGGACGTGGACTCCCTGATCCTGTCCCAGCCCGACAACGGCGAGCAGGCGCTGGAGATCACCGACATGCTCATCC
GCTCCGGCGCGCTGGACCTGATCGTGATCGACTCGGTGGCGGCCCTGGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACTCCCATGTGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGATCACCGGTGCGCTCAGCCAGTCCAAGAC
CACCACCGTCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGGTCGCCGGAGACGACCACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGGATCGAGACGCTCAAGGACGGCACGGAGGCGGTGGGCAAC
CGCACCCGGGTGAAGGTGGTCAAGAACAAGGTGGCCCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCATCGG
GATCAGCCGGGAGGGCGGGCTGATCGACATGGGGGTGGAGCACGGCTTCATCCGCAAGTCGGGCGCCTGGTACACCTATG
AGGGCGACCAGTTGGGGCAGGGCAAGGAGAACGCCCGCAACTTCCTGCGCGACAACCCCGATCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTCGGCATCGGGACACGGCCGGAGGCGGAGCCCGGGCCGGAAACCGGGCAGGACGCCATCCG
CACCCTCGCCGCCGGGTTCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.57

97.45

0.649
  recA Neisseria gonorrhoeae MS11

67.791

92.351

0.626
  recA Neisseria gonorrhoeae strain FA1090

67.791

92.351

0.626
  recA Staphylococcus aureus strain ATCC 12600

64.223

96.601

0.62
  recA Ralstonia pseudosolanacearum GMI1000

69.329

88.669

0.615
  recA Latilactobacillus sakei subsp. sakei 23K

61.605

98.867

0.609
  recA Vibrio cholerae strain A1552

65.846

92.068

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.846

92.068

0.606
  recA Acinetobacter baumannii D1279779

65.538

92.068

0.603
  recA Acinetobacter nosocomialis M2

65.231

92.068

0.601
  recA Acinetobacter baylyi ADP1

65.231

92.068

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

92.068

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

93.201

0.589
  recA Helicobacter pylori strain NCTC11637

61.062

96.034

0.586
  recA Helicobacter pylori 26695

61.062

96.034

0.586
  recA Glaesserella parasuis strain SC1401

63.272

91.785

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

92.918

0.581
  recA Streptococcus pyogenes NZ131

61.094

93.201

0.569
  recA Streptococcus mutans UA159

60.79

93.201

0.567
  recA Lactococcus lactis subsp. cremoris KW2

60.486

93.201

0.564
  recA Streptococcus thermophilus LMD-9

60

93.484

0.561
  recA Streptococcus thermophilus LMG 18311

60

93.484

0.561
  recA Streptococcus mitis NCTC 12261

59.697

93.484

0.558
  recA Streptococcus mitis SK321

59.697

93.484

0.558
  recA Streptococcus pneumoniae R6

59.878

93.201

0.558
  recA Streptococcus pneumoniae R36A

59.878

93.201

0.558
  recA Streptococcus pneumoniae Rx1

59.878

93.201

0.558
  recA Streptococcus pneumoniae D39

59.878

93.201

0.558
  recA Streptococcus pneumoniae TIGR4

59.878

93.201

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.944

90.935

0.527