Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QPK52_RS06445 Genome accession   NZ_CP127170
Coordinates   1433253..1434383 (-) Length   376 a.a.
NCBI ID   WP_410536054.1    Uniprot ID   -
Organism   Streptomyces sp. KL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1428253..1439383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK52_RS06420 - 1428445..1429278 (+) 834 WP_410540233.1 glutamate ABC transporter substrate-binding protein -
  QPK52_RS06425 - 1429380..1430054 (+) 675 WP_410536051.1 amino acid ABC transporter permease -
  QPK52_RS06430 - 1430051..1430959 (+) 909 WP_410536052.1 amino acid ABC transporter permease -
  QPK52_RS06435 - 1431132..1432694 (+) 1563 WP_410536053.1 FAD-dependent monooxygenase -
  QPK52_RS06440 recX 1432719..1433253 (-) 535 Protein_1281 recombination regulator RecX -
  QPK52_RS06445 recA 1433253..1434383 (-) 1131 WP_410536054.1 recombinase RecA Machinery gene
  QPK52_RS06450 - 1434625..1434819 (-) 195 WP_093663386.1 DUF3046 domain-containing protein -
  QPK52_RS06455 - 1434878..1435195 (-) 318 WP_410536055.1 AzlD domain-containing protein -
  QPK52_RS06460 - 1435192..1435866 (-) 675 WP_410540234.1 AzlC family ABC transporter permease -
  QPK52_RS06465 - 1436050..1436901 (-) 852 WP_410536056.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39803.31 Da        Isoelectric Point: 6.5265

>NTDB_id=771297 QPK52_RS06445 WP_410536054.1 1433253..1434383(-) (recA) [Streptomyces sp. KL2]
MAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPVEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRMGGTVAFVDAEHALDPEYAKRLGVDVDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALSQSKTTAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAVGN
RTRVKVVKNKVAPPFKQAEFDILYGIGISREGGLIDMGVEHGFIRKSGAWYTYEGDQLGQGKENARNFLRDNPDLANEIE
KKIKEKLGIGPKTEAPEGEPGADAAGAEAAPAAAAKTVPAPATRAKAVKSTAAAKS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=771297 QPK52_RS06445 WP_410536054.1 1433253..1434383(-) (recA) [Streptomyces sp. KL2]
ATGGCAGGAAACGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAGTTCGGCAAGGGCGCCGTGAT
GCGCCTGGGCGAGCGGCCGAACGAGCCCGTCGAGGTGATCCCGACCGGGTCGACCGCCCTGGACGTCGCCCTGGGCGTGG
GCGGCCTGCCGCGCGGCCGGGTGGTGGAGGTCTACGGGCCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCACGCGGTG
GCCAACGCCCAGCGGATGGGCGGCACGGTCGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAGTACGCCAAGCGGCT
GGGCGTGGACGTGGACTCCCTGATCCTGTCCCAGCCCGACAACGGCGAGCAGGCGCTGGAGATCACCGACATGCTCATCC
GCTCCGGCGCGCTGGACCTGATCGTGATCGACTCGGTGGCGGCCCTGGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACTCCCATGTGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGATCACCGGTGCGCTCAGCCAGTCCAAGAC
CACCGCCATCTTCATCAACCAGCTCCGCGAGAAGGTCGGCGTGATGTTCGGGTCGCCGGAGACGACCACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGGATCGAGACGCTCAAGGACGGCACGGAGGCGGTGGGCAAC
CGCACCCGGGTGAAGGTGGTCAAGAACAAGGTGGCCCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCATCGG
GATCAGCCGGGAGGGCGGGCTGATCGACATGGGGGTGGAGCACGGCTTCATCCGCAAGTCGGGCGCCTGGTACACCTATG
AGGGCGACCAGTTGGGGCAGGGCAAGGAGAACGCCCGCAACTTCCTGCGCGACAACCCCGATCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTCGGCATCGGCCCGAAGACCGAGGCCCCCGAGGGCGAGCCGGGCGCGGACGCGGCCGGAGC
CGAGGCCGCCCCGGCCGCGGCGGCGAAGACGGTGCCCGCACCGGCGACGCGCGCCAAGGCGGTCAAGAGCACCGCAGCGG
CCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.959

90.957

0.609
  recA Ralstonia pseudosolanacearum GMI1000

69.524

83.777

0.582
  recA Staphylococcus aureus strain ATCC 12600

67.178

86.702

0.582
  recA Neisseria gonorrhoeae MS11

68.012

85.638

0.582
  recA Neisseria gonorrhoeae strain FA1090

68.012

85.638

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

63.05

90.691

0.572
  recA Vibrio cholerae strain A1552

66.254

85.904

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

85.904

0.569
  recA Acinetobacter baumannii D1279779

65.944

85.904

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

86.702

0.566
  recA Acinetobacter nosocomialis M2

65.635

85.904

0.564
  recA Acinetobacter baylyi ADP1

65.432

86.17

0.564
  recA Streptococcus pneumoniae R36A

58.611

95.745

0.561
  recA Streptococcus pneumoniae R6

58.611

95.745

0.561
  recA Streptococcus pneumoniae D39

58.611

95.745

0.561
  recA Streptococcus pneumoniae Rx1

58.611

95.745

0.561
  recA Streptococcus pneumoniae TIGR4

58.611

95.745

0.561
  recA Streptococcus pyogenes NZ131

62.84

88.032

0.553
  recA Streptococcus mutans UA159

62.538

88.032

0.551
  recA Lactococcus lactis subsp. cremoris KW2

61.607

89.362

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.767

90.16

0.548
  recA Streptococcus mitis SK321

60.767

90.16

0.548
  recA Streptococcus thermophilus LMG 18311

61.747

88.298

0.545
  recA Streptococcus thermophilus LMD-9

61.747

88.298

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

87.766

0.545
  recA Glaesserella parasuis strain SC1401

61.89

87.234

0.54
  recA Streptococcus mitis NCTC 12261

61.329

88.032

0.54
  recA Helicobacter pylori strain NCTC11637

62.154

86.436

0.537
  recA Helicobacter pylori 26695

62.154

86.436

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.255

85.372

0.497