Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PKHYL_RS17230 Genome accession   NZ_AP019516
Coordinates   983798..984097 (-) Length   99 a.a.
NCBI ID   WP_269778260.1    Uniprot ID   -
Organism   Psychrobacter sp. KH172YL61     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 978798..989097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKHYL_RS05160 (PKHYL_12160) gpmI 979628..981292 (+) 1665 WP_083328846.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  PKHYL_RS05165 (PKHYL_12170) - 981555..982997 (+) 1443 WP_240366151.1 S41 family peptidase -
  PKHYL_RS05170 (PKHYL_12180) pilR 983080..983241 (-) 162 WP_240366152.1 helix-turn-helix domain-containing protein Regulator
  PKHYL_RS17225 (PKHYL_12190) - 983205..983795 (-) 591 WP_269778259.1 hypothetical protein -
  PKHYL_RS17230 (PKHYL_12200) pilR 983798..984097 (-) 300 WP_269778260.1 sigma 54-interacting transcriptional regulator Regulator
  PKHYL_RS17235 pilR 984061..984372 (-) 312 WP_269778261.1 sigma 54-interacting transcriptional regulator Regulator
  PKHYL_RS17240 (PKHYL_12210) pilR 984380..984784 (-) 405 WP_269778262.1 response regulator Regulator
  PKHYL_RS05180 (PKHYL_12220) - 984913..985188 (-) 276 WP_240366153.1 ATP-binding protein -
  PKHYL_RS05185 (PKHYL_12230) - 985193..985783 (-) 591 WP_240366154.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  PKHYL_RS05190 (PKHYL_12240) - 985758..986438 (-) 681 WP_240366155.1 hypothetical protein -
  PKHYL_RS05195 - 986498..986707 (-) 210 WP_240366156.1 hypothetical protein -
  PKHYL_RS05200 (PKHYL_12250) - 986744..987378 (-) 635 Protein_1054 response regulator -
  PKHYL_RS05205 (PKHYL_12260) - 987812..988888 (+) 1077 WP_071001964.1 serine hydrolase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11302.07 Da        Isoelectric Point: 5.6976

>NTDB_id=72646 PKHYL_RS17230 WP_269778260.1 983798..984097(-) (pilR) [Psychrobacter sp. KH172YL61]
MFQQANGGTLFLDEVADLPLAMQVKLLRAIQEKTVRAIGDTKEVPVDIRILSATHKDLSRLVQDGAFRQDLYYRINVIEL
KLPTLNDRRDDIPVLAEHF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=72646 PKHYL_RS17230 WP_269778260.1 983798..984097(-) (pilR) [Psychrobacter sp. KH172YL61]
TTGTTTCAGCAAGCCAATGGCGGTACTTTATTTTTAGATGAGGTGGCAGACTTACCATTAGCGATGCAGGTGAAGCTGTT
GCGTGCTATTCAAGAAAAGACCGTGAGGGCTATTGGTGACACCAAAGAAGTACCAGTAGACATCCGCATTTTATCCGCTA
CTCATAAAGATTTGAGCCGCTTGGTACAGGATGGCGCATTTCGACAAGATTTGTATTATCGTATCAATGTGATTGAGCTT
AAGCTACCGACATTGAATGATCGACGTGATGACATCCCTGTATTAGCAGAGCATTTTTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(2-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

71.717

100

0.717
  pilR Acinetobacter baumannii strain A118

57.895

95.96

0.556
  luxO Vibrio cholerae strain A1552

50

90.909

0.455

Multiple sequence alignment