Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J68_RS00275 Genome accession   NZ_AP018773
Coordinates   57086..57598 (-) Length   170 a.a.
NCBI ID   WP_005651545.1    Uniprot ID   A0A0H3PJN2
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52086..62598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS00260 (CHBNIII2_00520) comQ 55392..55679 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J68_RS00265 (CHBNIII2_00530) comP 55672..56355 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  K6J68_RS00270 (CHBNIII2_00540) comO 56370..57086 (-) 717 WP_005655922.1 type II secretion system protein J Machinery gene
  K6J68_RS00275 (CHBNIII2_00550) comN 57086..57598 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  K6J68_RS00280 (CHBNIII2_00560) suhB 57798..58601 (+) 804 WP_005659182.1 inositol-1-monophosphatase -
  K6J68_RS00285 (CHBNIII2_00570) nrfE 58710..60617 (+) 1908 WP_005659178.1 heme lyase NrfEFG subunit NrfE -
  K6J68_RS00290 (CHBNIII2_00580) - 60617..61147 (+) 531 WP_005659175.1 DsbE family thiol:disulfide interchange protein -
  K6J68_RS00295 (CHBNIII2_00590) nrfF 61144..62298 (+) 1155 WP_005686194.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19877.15 Da        Isoelectric Point: 8.9743

>NTDB_id=71022 K6J68_RS00275 WP_005651545.1 57086..57598(-) (comN) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=71022 K6J68_RS00275 WP_005651545.1 57086..57598(-) (comN) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PJN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment