Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PDI73_RS04215 Genome accession   NZ_CP115479
Coordinates   888434..889459 (-) Length   341 a.a.
NCBI ID   WP_277730447.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 883434..894459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS04190 (PDI73_04190) - 884697..885581 (-) 885 WP_277730445.1 ATP-binding cassette domain-containing protein -
  PDI73_RS04195 (PDI73_04195) - 885584..885949 (-) 366 WP_017864521.1 GntR family transcriptional regulator -
  PDI73_RS04200 (PDI73_04200) - 886079..887095 (-) 1017 WP_098393823.1 alpha/beta hydrolase -
  PDI73_RS04205 (PDI73_04205) - 887632..887952 (+) 321 WP_277730446.1 hypothetical protein -
  PDI73_RS04210 (PDI73_04210) - 887970..888251 (+) 282 WP_017864524.1 bacteriocin immunity protein -
  PDI73_RS04215 (PDI73_04215) recA 888434..889459 (-) 1026 WP_277730447.1 recombinase RecA Machinery gene
  PDI73_RS04220 (PDI73_04220) - 889474..889866 (-) 393 WP_277730448.1 hypothetical protein -
  PDI73_RS04225 (PDI73_04225) - 889863..891305 (-) 1443 WP_277730449.1 Y-family DNA polymerase -
  PDI73_RS04230 (PDI73_04230) - 891524..891766 (-) 243 WP_277730450.1 pentapeptide repeat-containing protein -
  PDI73_RS04235 (PDI73_04235) - 891910..892200 (-) 291 WP_277730451.1 hypothetical protein -
  PDI73_RS04240 (PDI73_04240) - 892477..892626 (-) 150 WP_277730452.1 hypothetical protein -
  PDI73_RS04245 (PDI73_04245) - 892639..892905 (-) 267 WP_277730453.1 TIGR04197 family type VII secretion effector -
  PDI73_RS04250 (PDI73_04250) - 893118..893777 (-) 660 WP_277730454.1 hypothetical protein -
  PDI73_RS04255 (PDI73_04255) - 893750..894253 (-) 504 WP_260313555.1 Mov34/MPN/PAD-1 family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37282.69 Da        Isoelectric Point: 6.9854

>NTDB_id=704786 PDI73_RS04215 WP_277730447.1 888434..889459(-) (recA) [Lactococcus lactis strain EP2]
MEQPDYTPRRVHKINDPEEKKLAILKATESIEKRFGSNTILNDEGKAAQHVQALPTGILSLDCAIGIGGYPKGRLIELFG
AESSGKTTVALQAVAETQKSGGYVAYIDAENSLDIEYAENLGVKADSLIFAQPDTGEEAFYMINEFVKTGAFDLIVVDSV
AALTPASEIDGVSIPGQQAKMMSEQLSKLVSKVNQTKAVIIFINQVRSTLSGLFLNKETTPGGSALKFYSSVRIEVKSGE
KIKDGIDTIGKKTTLHTVKNKVSAPYKKPSVINVFGDGFSQEIDVVTLAIQMGVVKKMNEWYSFNGQKLGRGIFSVKEYL
VSHQSVFEILKHLTRESLQFY

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=704786 PDI73_RS04215 WP_277730447.1 888434..889459(-) (recA) [Lactococcus lactis strain EP2]
ATGGAACAGCCAGATTATACTCCGAGACGAGTACATAAAATAAATGACCCAGAAGAAAAGAAATTGGCTATCCTTAAAGC
CACAGAATCAATTGAGAAAAGATTTGGCTCAAATACTATCTTAAATGATGAAGGGAAGGCAGCCCAACATGTTCAGGCGC
TTCCTACTGGCATTCTGTCGTTAGATTGTGCGATTGGCATTGGTGGTTATCCAAAAGGACGCCTTATAGAGCTTTTTGGG
GCTGAATCTTCAGGTAAAACAACTGTTGCACTTCAGGCCGTAGCTGAAACTCAGAAATCTGGTGGATATGTAGCGTATAT
CGATGCTGAAAATTCACTTGATATTGAATATGCTGAAAACCTTGGAGTAAAAGCTGATAGTTTAATCTTTGCACAACCAG
ATACTGGTGAAGAAGCCTTTTATATGATTAATGAATTTGTTAAGACTGGGGCTTTTGACTTGATTGTTGTTGATTCGGTT
GCTGCTCTGACACCTGCTTCAGAAATTGATGGGGTAAGTATTCCAGGTCAGCAAGCTAAAATGATGTCAGAACAGCTCTC
TAAGCTCGTTTCAAAAGTAAACCAAACAAAGGCTGTCATTATCTTCATCAATCAAGTGCGTTCAACCTTGAGTGGACTAT
TCTTAAATAAGGAAACCACCCCAGGAGGGTCTGCTTTAAAATTTTATTCTTCTGTACGTATTGAAGTTAAATCAGGAGAA
AAAATCAAAGATGGCATTGATACCATTGGTAAAAAAACAACTCTCCATACCGTTAAAAACAAAGTATCAGCTCCATATAA
AAAACCATCTGTCATTAATGTCTTTGGGGATGGATTCTCTCAAGAAATAGACGTGGTTACGCTAGCGATTCAAATGGGAG
TAGTTAAGAAAATGAATGAATGGTACTCTTTTAACGGTCAAAAGCTAGGACGTGGAATATTTAGCGTTAAGGAGTATCTA
GTAAGTCACCAATCTGTTTTTGAGATACTTAAACATCTAACTAGAGAGTCACTTCAATTCTACTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(24-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

45.614

100

0.457
  recA Streptococcus mitis NCTC 12261

45.322

100

0.455
  recA Streptococcus thermophilus LMD-9

47.077

95.308

0.449
  recA Streptococcus thermophilus LMG 18311

47.077

95.308

0.449
  recA Streptococcus mutans UA159

46.462

95.308

0.443
  recA Streptococcus pyogenes NZ131

46.462

95.308

0.443
  recA Lactococcus lactis subsp. cremoris KW2

46.605

95.015

0.443
  recA Streptococcus pneumoniae D39

44.807

98.827

0.443
  recA Streptococcus pneumoniae TIGR4

44.807

98.827

0.443
  recA Streptococcus pneumoniae R36A

44.807

98.827

0.443
  recA Streptococcus pneumoniae Rx1

44.807

98.827

0.443
  recA Streptococcus pneumoniae R6

44.807

98.827

0.443
  recA Acinetobacter baumannii D1279779

45.062

95.015

0.428
  recA Acinetobacter nosocomialis M2

44.753

95.015

0.425
  recA Bacillus subtilis subsp. subtilis str. 168

45.171

94.135

0.425
  recA Latilactobacillus sakei subsp. sakei 23K

46.154

91.496

0.422
  recA Acinetobacter baylyi ADP1

44.136

95.015

0.419
  recA Staphylococcus aureus strain ATCC 12600

44.272

94.721

0.419
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.689

88.563

0.413
  recA Vibrio cholerae strain A1552

43.21

95.015

0.411
  recA Vibrio cholerae O1 biovar El Tor strain E7946

43.21

95.015

0.411
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

42.296

97.067

0.411
  recA Glaesserella parasuis strain SC1401

41.718

95.601

0.399
  recA Ralstonia pseudosolanacearum GMI1000

43.73

91.202

0.399
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.997

90.029

0.387
  recA Helicobacter pylori strain NCTC11637

40.615

95.308

0.387
  recA Helicobacter pylori 26695

40.308

95.308

0.384
  recA Pseudomonas stutzeri DSM 10701

39.198

95.015

0.372
  recA Neisseria gonorrhoeae strain FA1090

42.857

86.217

0.37
  recA Neisseria gonorrhoeae MS11

42.857

86.217

0.37