Detailed information NTG0070216

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: M2Y46_RS06190
• Genome accession: NZ_AP023347
• Coordinates: 1286925..1287968 (-)
• Length: 347 a.a.
• NCBI ID: WP_096415694.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain JSHR6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1281925..1292968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2Y46_RS06160 (JSHR6_12250)	-	1282158..1283276 (+)	1119	WP_248415284.1	glycosyltransferase family 8 protein	-
M2Y46_RS06165 (JSHR6_12260)	-	1283273..1284229 (-)	957	WP_000952288.1	PDC sensor domain-containing protein	-
M2Y46_RS06170 (JSHR6_12270)	-	1284251..1284739 (-)	489	WP_248415285.1	shikimate kinase	-
M2Y46_RS06175 (JSHR6_12280)	-	1284744..1285349 (-)	606	WP_248415286.1	AMIN domain-containing protein	-
M2Y46_RS06180 (JSHR6_12290)	-	1285365..1285640 (-)	276	WP_000146213.1	hypothetical protein	-
M2Y46_RS06185 (JSHR6_12300)	eno	1285633..1286913 (-)	1281	WP_000955622.1	phosphopyruvate hydratase	-
M2Y46_RS06190 (JSHR6_12310)	recA	1286925..1287968 (-)	1044	WP_096415694.1	recombinase RecA	Machinery gene
M2Y46_RS06195 (JSHR6_12320)	-	1288067..1288933 (+)	867	WP_212854914.1	menaquinone biosynthesis family protein	-
M2Y46_RS06200 (JSHR6_12330)	-	1288930..1289697 (-)	768	WP_096464174.1	hypothetical protein	-
M2Y46_RS06205 (JSHR6_12340)	-	1289785..1290366 (-)	582	WP_001919567.1	hypothetical protein	-
M2Y46_RS06210 (JSHR6_12350)	-	1290378..1290962 (-)	585	WP_212896425.1	hypothetical protein	-
M2Y46_RS06215 (JSHR6_12360)	-	1291063..1291269 (-)	207	WP_015427380.1	DUF4006 family protein	-
M2Y46_RS06220 (JSHR6_12370)	ccoP	1291280..1292158 (-)	879	WP_248415287.1	cytochrome-c oxidase, cbb3-type subunit III	-
M2Y46_RS06225 (JSHR6_12380)	-	1292160..1292378 (-)	219	WP_172415715.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37699.43 Da
• Isoelectric Point: 5.7176

>NTDB_id=70216 M2Y46_RS06190 WP_096415694.1 1286925..1287968(-) (recA) [Helicobacter pylori strain JSHR6]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCTFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=70216 M2Y46_RS06190 WP_096415694.1 1286925..1287968(-) (recA) [Helicobacter pylori strain JSHR6]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGTTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCACGTTTATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATCTACTTGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCGGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTAAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGCATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (9-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori 26695	99.135	100	0.991
recA	Helicobacter pylori strain NCTC11637	99.135	100	0.991
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	78.659	94.524	0.744
recA	Staphylococcus aureus strain ATCC 12600	63.343	98.271	0.622
recA	Neisseria gonorrhoeae MS11	66.154	93.66	0.62
recA	Neisseria gonorrhoeae strain FA1090	66.154	93.66	0.62
recA	Acinetobacter nosocomialis M2	62.573	98.559	0.617
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.157	95.677	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	64.923	93.66	0.608
recA	Acinetobacter baumannii D1279779	63.609	94.236	0.599
recA	Acinetobacter baylyi ADP1	63.303	94.236	0.597
recA	Ralstonia pseudosolanacearum GMI1000	61.607	96.83	0.597
recA	Pseudomonas stutzeri DSM 10701	60.234	98.559	0.594
recA	Vibrio cholerae strain A1552	61.012	96.83	0.591
recA	Vibrio cholerae O1 biovar El Tor strain E7946	61.012	96.83	0.591
recA	Glaesserella parasuis strain SC1401	60.366	94.524	0.571
recA	Streptococcus pneumoniae R6	55.556	100	0.562
recA	Streptococcus pneumoniae R36A	55.556	100	0.562
recA	Streptococcus pneumoniae Rx1	55.556	100	0.562
recA	Streptococcus pneumoniae D39	55.556	100	0.562
recA	Streptococcus pneumoniae TIGR4	55.556	100	0.562
recA	Latilactobacillus sakei subsp. sakei 23K	54.342	100	0.559
recA	Streptococcus pyogenes NZ131	57.273	95.101	0.545
recA	Lactococcus lactis subsp. cremoris KW2	57.447	94.813	0.545
recA	Streptococcus mitis NCTC 12261	57.143	94.813	0.542
recA	Streptococcus mitis SK321	57.143	94.813	0.542
recA	Streptococcus mutans UA159	55.689	96.254	0.536
recA	Streptococcus thermophilus LMD-9	56.364	95.101	0.536
recA	Streptococcus thermophilus LMG 18311	56.364	95.101	0.536
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.135	93.948	0.527