Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OK113_RS00465 Genome accession   NZ_CP109891
Coordinates   117540..118583 (+) Length   347 a.a.
NCBI ID   WP_004087616.1    Uniprot ID   Q87F44
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112540..123583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK113_RS00450 (OK113_00450) - 113137..114165 (-) 1029 WP_004087619.1 right-handed parallel beta-helix repeat-containing protein -
  OK113_RS00455 (OK113_00455) - 115219..116250 (+) 1032 WP_011097498.1 nitronate monooxygenase family protein -
  OK113_RS00460 (OK113_00460) dinR/lexA 116723..117358 (+) 636 WP_004087617.1 transcriptional repressor LexA Regulator
  OK113_RS00465 (OK113_00465) recA 117540..118583 (+) 1044 WP_004087616.1 recombinase RecA Machinery gene
  OK113_RS00470 (OK113_00470) alaS 119071..121725 (+) 2655 WP_004087615.1 alanine--tRNA ligase -
  OK113_RS00475 (OK113_00475) csrA 121864..122079 (+) 216 WP_004085529.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37656.32 Da        Isoelectric Point: 5.0879

>NTDB_id=681185 OK113_RS00465 WP_004087616.1 117540..118583(+) (recA) [Xylella fastidiosa subsp. fastidiosa strain CFBP8083]
MDENKKRALSVALSQIEKQFGKGSVMRMGDRVIEAVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKRGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQGKDNARGYLRENPHFAAKL
EADLREKFEPTELSREEGDEDTLEDAM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=681185 OK113_RS00465 WP_004087616.1 117540..118583(+) (recA) [Xylella fastidiosa subsp. fastidiosa strain CFBP8083]
ATGGATGAGAACAAGAAACGCGCCCTTTCTGTCGCTTTAAGCCAGATTGAAAAACAGTTCGGCAAGGGGTCCGTGATGCG
GATGGGCGATCGCGTGATCGAAGCCGTAGAGGCGATCCCGACAGGTTCGCTCATGTTGGATCTGGCCCTGGGGATAGGTG
GTTTGCCAAAGGGACGTGTCGTGGAAATCTATGGGCCGGAATCTTCTGGGAAGACCACATTGACTTTGCAGGCGATCGCT
CAATGCCAGAAGAGGGGAGGTACAGCAGCGTTCATTGATGCTGAGCATGCCTTGGATCCGATTTATGCGGGCAAGTTAGG
CGTCAATGTTGATGATTTGTTGTTGTCTCAGCCAGATACTGGGGAGCAGGCTCTGGAAATCGCTGACATGCTGGTGCGCT
CGGGGTCGATCGATATCATGGTTATTGATTCGGTTGCGGCACTCACGCCAAGGGCGGAGATTGAGGGTGAGATGGGAGAT
CAGTTGCCCGGTCTTCAGGCGCGATTGATGAGCCAGGCGCTGCGTAAATTGACCGGCAATATCAAGCGCTCTAATACGCT
GGTGATTTTTATCAACCAGTTGCGTATGAAAATTGGGATCATGATGCCGGGTCAAAGCCCTGAAACTACGACAGGGGGTA
ATGCGCTGAAGTTCTATGCTTCTGTGCGTTTGGATATTCGCCGTATTGGCGCGATCAAGAAAGGTGACGAAATTATCGGG
AATCAAACCAAAATCAAGGTTGTTAAAAACAAGTTGGCGCCTCCCTTCAAACAAGTCGTGACTGAGATTCTCTATGGTGA
AGGCATCAGTCGTGAAGGGGAATTGATTGAAATGGGCGTGGAGGCCAAGTTGGTTGAGAAAGCCGGCGCTTGGTATAGCT
ATGGTGGTGAGCGGATCGGGCAAGGAAAAGATAATGCGCGTGGCTATCTACGCGAAAACCCGCATTTTGCGGCCAAGCTT
GAGGCTGATTTGCGTGAGAAATTTGAGCCGACCGAGCTTTCTCGAGAAGAGGGCGATGAAGATACGCTCGAAGATGCAAT
GTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87F44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.145

99.424

0.697
  recA Ralstonia pseudosolanacearum GMI1000

72.727

95.101

0.692
  recA Acinetobacter baumannii D1279779

71.601

95.389

0.683
  recA Acinetobacter nosocomialis M2

71.601

95.389

0.683
  recA Pseudomonas stutzeri DSM 10701

71.646

94.524

0.677
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

93.948

0.66
  recA Vibrio cholerae strain A1552

70.245

93.948

0.66
  recA Neisseria gonorrhoeae MS11

66.082

98.559

0.651
  recA Neisseria gonorrhoeae strain FA1090

66.082

98.559

0.651
  recA Glaesserella parasuis strain SC1401

68.111

93.084

0.634
  recA Staphylococcus aureus strain ATCC 12600

61.272

99.712

0.611
  recA Helicobacter pylori strain NCTC11637

61.446

95.677

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.438

92.219

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

59.184

98.847

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.778

96.254

0.585
  recA Helicobacter pylori 26695

60.843

95.677

0.582
  recA Streptococcus thermophilus LMG 18311

58.43

99.135

0.579
  recA Streptococcus thermophilus LMD-9

58.43

99.135

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

61.538

93.66

0.576
  recA Streptococcus pneumoniae Rx1

60.366

94.524

0.571
  recA Streptococcus pneumoniae R36A

60.366

94.524

0.571
  recA Streptococcus pneumoniae D39

60.366

94.524

0.571
  recA Streptococcus pneumoniae R6

60.366

94.524

0.571
  recA Streptococcus pneumoniae TIGR4

60.366

94.524

0.571
  recA Streptococcus mutans UA159

60

95.101

0.571
  recA Streptococcus pyogenes NZ131

59.394

95.101

0.565
  recA Streptococcus mitis SK321

59.756

94.524

0.565
  recA Streptococcus mitis NCTC 12261

59.451

94.524

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

93.948

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.154

93.66

0.545