Detailed information NTG0067832

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NALG_RS08095
• Genome accession: NZ_AP017373
• Coordinates: 1628570..1630816 (+)
• Length: 748 a.a.
• NCBI ID: WP_096369149.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain 122061
• Function: degradation of ComX (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1630917..1632058	1628570..1630816	flank	101

Gene organization within MGE regions

Location: 1628570..1632058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NALG_RS08095 (NALG_1600)	clpC	1628570..1630816 (+)	2247	WP_096369149.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
NALG_RS08100	-	1630901..1632058 (-)	1158	Protein_1570	IS3 family transposase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83412.43 Da
• Isoelectric Point: 4.7419

>NTDB_id=67832 NALG_RS08095 WP_096369149.1 1628570..1630816(+) (clpC) [Lactococcus formosensis strain 122061]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEVEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=67832 NALG_RS08095 WP_096369149.1 1628570..1630816(+) (clpC) [Lactococcus formosensis strain 122061]
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGCTTGTTTGCTGGGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGACCACAAAATCCTCGTGGAGGTCAAGCACCTAAAGGACTACTCGAAGAGTT
CGGAGTCAATATCACAGATGCCGCACGCCGTGGAGAAATTGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCAGGTGTTGGTAAAACAGCAGTTGTTGAA
GGGTTAGCCCAAAAAATCGTTGATGGTGATGTACCACAAAAATTGCAAAATAAAGAAGTTATACGTCTTGATGTTGTTAG
CCTCGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAACGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ATGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCAGGAAAT
ATTCTAAAACCAGCTTTGGCGCGTGGTGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATTACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAGATTTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATCGTTGAAGAAAAAACACATATTCCTGTGGGTGATTTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCTGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCACAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTGGGTTATGATCCGAAAATGGGAGCACGCCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGCATCCTGAGTATAAAGAGTTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGTTGAAGA
GAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (284-383)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• ATPase family associated with various cellular activities (AAA) (AAA) (146-265)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.649	100	0.868
clpE	Streptococcus mutans UA159	77.543	100	0.785
clpE	Streptococcus pneumoniae TIGR4	77.702	97.727	0.759
clpE	Streptococcus pneumoniae Rx1	77.702	97.727	0.759
clpE	Streptococcus pneumoniae D39	77.702	97.727	0.759
clpE	Streptococcus pneumoniae R6	77.702	97.727	0.759
clpC	Bacillus subtilis subsp. subtilis str. 168	51.286	88.369	0.453
clpC	Streptococcus pneumoniae D39	46.19	85.963	0.397
clpC	Streptococcus pneumoniae Rx1	46.19	85.963	0.397
clpC	Streptococcus pneumoniae TIGR4	46.034	85.963	0.396
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.961	81.952	0.393
clpC	Streptococcus mutans UA159	46.688	82.754	0.386
clpC	Streptococcus thermophilus LMD-9	46.006	83.69	0.385
clpC	Streptococcus thermophilus LMG 18311	45.645	82.888	0.378