Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG955_RS15725 Genome accession   NZ_CP109313
Coordinates   3420526..3421659 (-) Length   377 a.a.
NCBI ID   WP_267001053.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01602     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3415526..3426659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG955_RS15705 (OG955_15685) - 3415735..3418278 (-) 2544 WP_406504172.1 FtsX-like permease family protein -
  OG955_RS15710 (OG955_15690) - 3418275..3418913 (-) 639 WP_389123210.1 ArsR/SmtB family transcription factor -
  OG955_RS15715 (OG955_15695) - 3419119..3419757 (+) 639 WP_355223424.1 hypothetical protein -
  OG955_RS15720 (OG955_15700) recX 3419845..3420522 (-) 678 WP_383963795.1 recombination regulator RecX -
  OG955_RS15725 (OG955_15705) recA 3420526..3421659 (-) 1134 WP_267001053.1 recombinase RecA Machinery gene
  OG955_RS15730 (OG955_15710) - 3421927..3422835 (+) 909 WP_406504174.1 SDR family oxidoreductase -
  OG955_RS15735 (OG955_15715) - 3422936..3424108 (-) 1173 WP_330248995.1 AI-2E family transporter -
  OG955_RS15740 (OG955_15720) - 3424292..3424486 (-) 195 WP_030974167.1 DUF3046 domain-containing protein -
  OG955_RS15745 (OG955_15725) - 3424566..3425480 (+) 915 WP_406504176.1 hypothetical protein -
  OG955_RS15750 (OG955_15730) - 3425832..3426137 (-) 306 WP_267001061.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39739.29 Da        Isoelectric Point: 6.5242

>NTDB_id=673933 OG955_RS15725 WP_267001053.1 3420526..3421659(-) (recA) [Streptomyces sp. NBC_01602]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRLGGSVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGIGVRPEAALPAEPGADAAGGTAAAADSAAKSVPAAAGKAKPAKTAAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=673933 OG955_RS15725 WP_267001053.1 3420526..3421659(-) (recA) [Streptomyces sp. NBC_01602]
ATGGCAGGAACCGACCGCGAGAAGGCGTTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCCATCGAGGTGATCCCCACCGGGTCGACCGCACTCGACGTCGCCCTCGGCGTCG
GCGGACTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGACCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCGGTG
GCGAATGCACAGCGGCTCGGCGGCTCGGTGGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGTGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCGCTCGAGATCGTGGACATGCTGGTCC
GCTCGGGCGCTCTCGACCTGATCGTCATCGACTCCGTCGCGGCACTCGTGCCCCGTGCGGAGATCGAGGGTGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCCCGGCTGATGAGCCAGGCACTCCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCATCGGTGCGCCTCGACATCCGTCGTATCGAGACGCTGAAGGACGGCACCGACGCCGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGTGAGGGCGGTCTGATCGACATGGGCGTGGAGCACGGCTTCGTACGCAAGGCGGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGATCTCGCCAACGAGATCGAG
AAGAAGATCCTTGAGAAGCTGGGCATCGGTGTCAGGCCGGAGGCGGCTCTGCCCGCCGAGCCCGGGGCGGACGCGGCGGG
CGGCACGGCGGCTGCGGCCGACAGTGCGGCGAAGTCGGTGCCCGCTGCGGCCGGCAAGGCAAAGCCGGCCAAGACTGCGG
CGGCCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.082

90.716

0.599
  recA Staphylococcus aureus strain ATCC 12600

67.178

86.472

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.472

0.581
  recA Acinetobacter baumannii D1279779

67.183

85.676

0.576
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.024

0.576
  recA Neisseria gonorrhoeae MS11

67.812

84.881

0.576
  recA Neisseria gonorrhoeae strain FA1090

67.812

84.881

0.576
  recA Vibrio cholerae strain A1552

66.873

85.676

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

85.676

0.573
  recA Acinetobacter baylyi ADP1

66.873

85.676

0.573
  recA Acinetobacter nosocomialis M2

66.873

85.676

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.905

89.655

0.573
  recA Streptococcus mitis NCTC 12261

58.287

96.021

0.56
  recA Helicobacter pylori strain NCTC11637

61.471

90.186

0.554
  recA Helicobacter pylori 26695

61.471

90.186

0.554
  recA Streptococcus mitis SK321

61.243

89.655

0.549
  recA Streptococcus mutans UA159

62.538

87.798

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.472

0.549
  recA Streptococcus pyogenes NZ131

62.727

87.533

0.549
  recA Glaesserella parasuis strain SC1401

61.677

88.594

0.546
  recA Streptococcus thermophilus LMG 18311

61.934

87.798

0.544
  recA Streptococcus thermophilus LMD-9

61.934

87.798

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.268

0.544
  recA Lactococcus lactis subsp. cremoris KW2

62.462

86.207

0.538
  recA Streptococcus pneumoniae R6

61.329

87.798

0.538
  recA Streptococcus pneumoniae R36A

61.329

87.798

0.538
  recA Streptococcus pneumoniae Rx1

61.329

87.798

0.538
  recA Streptococcus pneumoniae D39

61.329

87.798

0.538
  recA Streptococcus pneumoniae TIGR4

61.329

87.798

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.567

85.146

0.499