Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG893_RS26705 Genome accession   NZ_CP109200
Coordinates   5809348..5810478 (+) Length   376 a.a.
NCBI ID   WP_129265823.1    Uniprot ID   A0ABU8A9R9
Organism   Streptomyces sp. NBC_01696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5804348..5815478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG893_RS26675 (OG893_26660) - 5804599..5805462 (+) 864 WP_329207323.1 AraC family transcriptional regulator -
  OG893_RS26680 (OG893_26665) - 5805473..5806252 (+) 780 WP_124275005.1 AzlC family ABC transporter permease -
  OG893_RS26685 (OG893_26670) - 5806249..5806554 (+) 306 WP_147984029.1 AzlD domain-containing protein -
  OG893_RS26690 (OG893_26675) - 5806566..5807480 (-) 915 WP_329207326.1 hypothetical protein -
  OG893_RS26695 (OG893_26680) - 5807561..5807755 (+) 195 WP_104789542.1 DUF3046 domain-containing protein -
  OG893_RS26700 (OG893_26685) - 5807943..5809091 (+) 1149 WP_124276036.1 AI-2E family transporter -
  OG893_RS26705 (OG893_26690) recA 5809348..5810478 (+) 1131 WP_129265823.1 recombinase RecA Machinery gene
  OG893_RS26710 (OG893_26695) recX 5810482..5811174 (+) 693 WP_329207328.1 recombination regulator RecX -
  OG893_RS26715 (OG893_26700) - 5811422..5812126 (-) 705 WP_329168712.1 hypothetical protein -
  OG893_RS26720 (OG893_26705) - 5812367..5812735 (-) 369 WP_124276038.1 rhodanese-like domain-containing protein -
  OG893_RS26725 (OG893_26710) - 5812816..5813358 (-) 543 WP_187281892.1 cysteine dioxygenase -
  OG893_RS26730 (OG893_26715) - 5813702..5815336 (-) 1635 WP_329207329.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39599.10 Da        Isoelectric Point: 6.1812

>NTDB_id=672583 OG893_RS26705 WP_129265823.1 5809348..5810478(+) (recA) [Streptomyces sp. NBC_01696]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENSRNFLKDNPDLANEIE
KKILDKLGVGVRAEDAAAEPAADAAAAAGAPAEGAAKSVPAPATKAKPAKAAAAKS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=672583 OG893_RS26705 WP_129265823.1 5809348..5810478(+) (recA) [Streptomyces sp. NBC_01696]
ATGGCAGGAACCGACCGCGAGAAGGCGCTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCGATCGAGGTGATCCCCACCGGATCCACCGCGCTCGACGTCGCGCTCGGCGTCG
GCGGGCTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGACCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGCTCGGCGGCTCGGTGGCGTTCATCGACGCGGAACACGCTCTCGACCCGGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAGCCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCGTGGACATGCTCGTCC
GCTCCGGCGCGCTGGACCTGATCGTGATCGACTCCGTCGCGGCGCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTCCGGAAGATCACCAGTGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGATGTTCGGTTCGCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGGATCGAGACCCTGAAGGACGGCACGGACGCGGTGGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGTGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACTCCCGCAACTTCCTCAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCCTCGACAAGCTCGGCGTCGGTGTCCGTGCGGAGGATGCCGCGGCGGAGCCCGCCGCCGATGCCGCGGCCGC
CGCAGGCGCCCCGGCCGAGGGAGCGGCCAAGTCGGTACCGGCTCCCGCGACCAAGGCCAAGCCCGCCAAGGCCGCAGCGG
CCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

64.826

91.489

0.593
  recA Staphylococcus aureus strain ATCC 12600

64.516

90.691

0.585
  recA Acinetobacter nosocomialis M2

64.516

90.691

0.585
  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.245

0.58
  recA Neisseria gonorrhoeae strain FA1090

68.125

85.106

0.58
  recA Neisseria gonorrhoeae MS11

68.125

85.106

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

66.564

86.702

0.577
  recA Acinetobacter baumannii D1279779

66.873

85.904

0.574
  recA Acinetobacter baylyi ADP1

66.563

85.904

0.572
  recA Vibrio cholerae strain A1552

65.944

85.904

0.566
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

85.904

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

64.134

87.5

0.561
  recA Streptococcus mutans UA159

61.584

90.691

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

86.702

0.553
  recA Streptococcus thermophilus LMD-9

60.997

90.691

0.553
  recA Streptococcus thermophilus LMG 18311

60.997

90.691

0.553
  recA Streptococcus mitis SK321

61.062

90.16

0.551
  recA Streptococcus pyogenes NZ131

62.727

87.766

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.5

0.545
  recA Streptococcus mitis NCTC 12261

61.631

88.032

0.543
  recA Lactococcus lactis subsp. cremoris KW2

62.462

86.436

0.54
  recA Streptococcus pneumoniae R6

61.329

88.032

0.54
  recA Streptococcus pneumoniae R36A

61.329

88.032

0.54
  recA Streptococcus pneumoniae Rx1

61.329

88.032

0.54
  recA Streptococcus pneumoniae D39

61.329

88.032

0.54
  recA Streptococcus pneumoniae TIGR4

61.329

88.032

0.54
  recA Glaesserella parasuis strain SC1401

63.043

85.638

0.54
  recA Helicobacter pylori 26695

62.154

86.436

0.537
  recA Helicobacter pylori strain NCTC11637

62.154

86.436

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.879

85.372

0.503