Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OIE49_RS26165 Genome accession   NZ_CP109090
Coordinates   5774973..5776088 (+) Length   371 a.a.
NCBI ID   WP_326804388.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5769973..5781088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS26140 (OIE49_26145) - 5770705..5771013 (+) 309 WP_100570754.1 AzlD domain-containing protein -
  OIE49_RS26145 (OIE49_26150) - 5771196..5772140 (-) 945 WP_326804385.1 hypothetical protein -
  OIE49_RS26150 (OIE49_26155) - 5772221..5772415 (+) 195 WP_100570752.1 DUF3046 domain-containing protein -
  OIE49_RS26155 (OIE49_26160) - 5772476..5773702 (+) 1227 WP_326804386.1 AI-2E family transporter -
  OIE49_RS26160 (OIE49_26165) - 5773806..5774726 (-) 921 WP_326804387.1 aminoglycoside phosphotransferase family protein -
  OIE49_RS26165 (OIE49_26170) recA 5774973..5776088 (+) 1116 WP_326804388.1 recombinase RecA Machinery gene
  OIE49_RS26170 (OIE49_26175) recX 5776092..5776991 (+) 900 WP_326804389.1 recombination regulator RecX -
  OIE49_RS26175 (OIE49_26180) - 5777104..5777526 (-) 423 WP_326804390.1 rhodanese-like domain-containing protein -
  OIE49_RS26180 (OIE49_26185) - 5777523..5778167 (-) 645 WP_326804391.1 cysteine dioxygenase -
  OIE49_RS26185 (OIE49_26190) - 5778465..5780066 (-) 1602 WP_326804392.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39561.09 Da        Isoelectric Point: 6.8893

>NTDB_id=670796 OIE49_RS26165 WP_326804388.1 5774973..5776088(+) (recA) [Streptomyces sp. NBC_01788]
MAGTDREKALDAALAQIERQFGKGAVMRMGERSKEPIEVIPTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAV
ANAQKAGGQVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAVGN
RTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEEPTTEPGTDAAVTTAADATAKAAPAKATKPKATSAKS

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=670796 OIE49_RS26165 WP_326804388.1 5774973..5776088(+) (recA) [Streptomyces sp. NBC_01788]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGACAATTCGGCAAGGGCGCGGTCAT
GCGCATGGGCGAGCGGTCGAAGGAGCCGATCGAGGTCATCCCGACCGGGTCGACCGCGCTCGACGTGGCTCTCGGCGTCG
GTGGCCTGCCGCGCGGCCGTGTCGTGGAGATCTACGGACCGGAGTCCTCCGGCAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCGCAGAAGGCGGGCGGCCAGGTCGCGTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTGATCCTCTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATTGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCCGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGCCACGTGGGTCTCCAGGCCCGGCTGATGAGCCAGGCCCTGCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGCATCGACATCCGCCGTATCGAGACCCTGAAGGACGGCACGGAGGCGGTCGGCAAC
CGGACCCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATTCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTCAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTGCGGCCGGAGGAGCCGACCACGGAGCCGGGCACGGACGCCGCGGTCAC
CACCGCCGCGGACGCCACGGCCAAGGCGGCGCCCGCCAAGGCCACCAAGCCCAAGGCCACCTCGGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

66.369

90.566

0.601
  recA Neisseria gonorrhoeae MS11

66.369

90.566

0.601
  recA Pseudomonas stutzeri DSM 10701

67.692

87.601

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

64.223

91.914

0.59
  recA Ralstonia pseudosolanacearum GMI1000

69.968

84.367

0.59
  recA Staphylococcus aureus strain ATCC 12600

66.871

87.871

0.588
  recA Vibrio cholerae strain A1552

65.758

88.949

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.758

88.949

0.585
  recA Acinetobacter baumannii D1279779

67.183

87.062

0.585
  recA Acinetobacter baylyi ADP1

67.183

87.062

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

87.871

0.582
  recA Acinetobacter nosocomialis M2

66.873

87.062

0.582
  recA Helicobacter pylori 26695

62.059

91.644

0.569
  recA Helicobacter pylori strain NCTC11637

62.059

91.644

0.569
  recA Streptococcus mutans UA159

61.877

91.914

0.569
  recA Streptococcus pyogenes NZ131

62.84

89.218

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

88.679

0.558
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

87.871

0.558
  recA Streptococcus thermophilus LMG 18311

60.526

92.183

0.558
  recA Streptococcus thermophilus LMD-9

60.526

92.183

0.558
  recA Streptococcus mitis NCTC 12261

61.446

89.488

0.55
  recA Streptococcus mitis SK321

61.446

89.488

0.55
  recA Streptococcus pneumoniae TIGR4

61.631

89.218

0.55
  recA Streptococcus pneumoniae D39

61.631

89.218

0.55
  recA Streptococcus pneumoniae Rx1

61.631

89.218

0.55
  recA Streptococcus pneumoniae R36A

61.631

89.218

0.55
  recA Streptococcus pneumoniae R6

61.631

89.218

0.55
  recA Lactococcus lactis subsp. cremoris KW2

61.329

89.218

0.547
  recA Glaesserella parasuis strain SC1401

63.043

86.792

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

86.253

0.512