Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG221_RS09445 Genome accession   NZ_CP108765
Coordinates   2200174..2201307 (-) Length   377 a.a.
NCBI ID   WP_328378878.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00932     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195174..2206307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG221_RS09420 (OG221_09425) - 2196180..2198054 (+) 1875 WP_405943799.1 FAD-dependent monooxygenase -
  OG221_RS09425 - 2198102..2198173 (+) 72 WP_311136958.1 putative leader peptide -
  OG221_RS09430 (OG221_09430) - 2198343..2198882 (+) 540 WP_405753960.1 cysteine dioxygenase -
  OG221_RS09435 (OG221_09435) - 2198987..2199412 (+) 426 WP_405945301.1 rhodanese-like domain-containing protein -
  OG221_RS09440 (OG221_09440) recX 2199502..2200170 (-) 669 WP_328378879.1 recombination regulator RecX -
  OG221_RS09445 (OG221_09445) recA 2200174..2201307 (-) 1134 WP_328378878.1 recombinase RecA Machinery gene
  OG221_RS09450 (OG221_09450) - 2201516..2202664 (-) 1149 WP_328380410.1 AI-2E family transporter -
  OG221_RS09455 (OG221_09455) - 2202936..2203130 (-) 195 WP_266852379.1 DUF3046 domain-containing protein -
  OG221_RS09460 (OG221_09460) - 2203210..2204124 (+) 915 WP_328378877.1 hypothetical protein -
  OG221_RS09465 (OG221_09465) - 2204185..2204490 (-) 306 WP_266852381.1 AzlD domain-containing protein -
  OG221_RS09470 (OG221_09470) - 2204487..2205362 (-) 876 WP_405943800.1 AzlC family ABC transporter permease -
  OG221_RS09475 (OG221_09475) - 2205373..2206248 (-) 876 WP_266852382.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39991.54 Da        Isoelectric Point: 5.9177

>NTDB_id=666304 OG221_RS09445 WP_328378878.1 2200174..2201307(-) (recA) [Streptomyces sp. NBC_00932]
MAAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHA
VANAQRLGGQVAFIDAEHALDPEYARKLGVDIDNLILSQPDNGEQALEIVDMLIRSGALDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKITGAMNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVG
NRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEI
EKKILEKLGIGVRREAELGVEPASDAAGAGVADEAAKTVPAPAGGKAKTAKTAAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=666304 OG221_RS09445 WP_328378878.1 2200174..2201307(-) (recA) [Streptomyces sp. NBC_00932]
ATGGCAGCAGGCAACGACCGCGAGAAGGCGCTGGACGCCGCTCTCGCCCAGATTGAACGGCAATTCGGCAAGGGCGCGGT
GATGCGCCTGGGCGAGCGGCCCAACGAGCCCATCGAGGTCATCCCCACCGGGTCGACCGCCCTCGACGTCGCGCTCGGTG
TCGGCGGTCTGCCGCGCGGCCGGGTGGTCGAGGTGTACGGGCCGGAGTCCTCCGGCAAGACGACGCTGACGCTGCACGCG
GTGGCGAACGCGCAGCGGCTCGGCGGCCAGGTGGCCTTCATCGACGCCGAGCACGCACTCGACCCCGAGTACGCGAGGAA
GCTCGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGCGAGCAGGCGCTGGAAATCGTCGACATGCTGA
TCCGTTCCGGCGCGCTCGACCTGGTCGTCATCGACTCCGTCGCGGCTCTGGTGCCGCGTGCGGAGATCGAGGGCGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCCCGGCTGATGAGCCAGGCGCTCCGCAAGATCACCGGCGCGATGAACCAGTCCAA
GACCACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTCATGTTCGGCTCCCCGGAGACCACCACGGGTGGCC
GGGCGCTGAAGTTCTACGCGTCGGTACGGCTCGACATCCGCCGGATCGAGACGCTGAAGGACGGTACCGACGCGGTCGGC
AACCGCACCCGGGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCA
GGGCATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGAACGGCTTCGTACGCAAGGCGGGCGCCTGGTACACGT
ACGAGGGCGACCAGCTCGGGCAGGGCAAGGAGAACGCCCGGAACTTCCTGAAGGACAACCCCGATCTCGCCAATGAGATC
GAGAAGAAGATCCTGGAGAAGCTGGGCATCGGTGTCAGGCGGGAGGCCGAGCTCGGAGTCGAGCCGGCCTCGGACGCCGC
AGGCGCCGGTGTGGCCGACGAGGCAGCGAAGACGGTTCCCGCTCCGGCCGGCGGCAAGGCCAAGACGGCCAAGACCGCCG
CGGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Staphylococcus aureus strain ATCC 12600

68.098

86.472

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

86.472

0.586
  recA Neisseria gonorrhoeae strain FA1090

68.536

85.146

0.584
  recA Neisseria gonorrhoeae MS11

68.536

85.146

0.584
  recA Pseudomonas stutzeri DSM 10701

67.492

85.676

0.578
  recA Acinetobacter baumannii D1279779

67.183

85.676

0.576
  recA Ralstonia pseudosolanacearum GMI1000

69.01

83.024

0.573
  recA Acinetobacter baylyi ADP1

66.667

85.942

0.573
  recA Acinetobacter nosocomialis M2

66.873

85.676

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.393

89.125

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

85.676

0.565
  recA Vibrio cholerae strain A1552

65.944

85.676

0.565
  recA Streptococcus mutans UA159

63.142

87.798

0.554
  recA Streptococcus pyogenes NZ131

63.333

87.533

0.554
  recA Streptococcus thermophilus LMD-9

62.538

87.798

0.549
  recA Streptococcus thermophilus LMG 18311

62.538

87.798

0.549
  recA Streptococcus mitis NCTC 12261

62.236

87.798

0.546
  recA Streptococcus mitis SK321

62.236

87.798

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

86.737

0.546
  recA Helicobacter pylori strain NCTC11637

62.424

87.533

0.546
  recA Helicobacter pylori 26695

62.424

87.533

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

87.533

0.546
  recA Streptococcus pneumoniae D39

61.934

87.798

0.544
  recA Streptococcus pneumoniae TIGR4

61.934

87.798

0.544
  recA Streptococcus pneumoniae Rx1

61.934

87.798

0.544
  recA Streptococcus pneumoniae R36A

61.934

87.798

0.544
  recA Streptococcus pneumoniae R6

61.934

87.798

0.544
  recA Lactococcus lactis subsp. cremoris KW2

63.077

86.207

0.544
  recA Glaesserella parasuis strain SC1401

63.043

85.411

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.385

85.411

0.499