Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG251_RS30170 Genome accession   NZ_CP108508
Coordinates   6766047..6767177 (+) Length   376 a.a.
NCBI ID   WP_326680050.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6761047..6772177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS30145 (OG251_30155) - 6761751..6762056 (+) 306 WP_326680046.1 AzlD domain-containing protein -
  OG251_RS30150 (OG251_30160) - 6762072..6762986 (-) 915 WP_326680047.1 hypothetical protein -
  OG251_RS30155 (OG251_30165) - 6763067..6763261 (+) 195 WP_326680048.1 DUF3046 domain-containing protein -
  OG251_RS30160 (OG251_30170) - 6763542..6764783 (+) 1242 WP_326681467.1 AI-2E family transporter -
  OG251_RS30165 (OG251_30175) - 6764816..6765778 (-) 963 WP_326680049.1 SDR family oxidoreductase -
  OG251_RS30170 (OG251_30180) recA 6766047..6767177 (+) 1131 WP_326680050.1 recombinase RecA Machinery gene
  OG251_RS30175 (OG251_30185) recX 6767181..6767924 (+) 744 WP_326680051.1 recombination regulator RecX -
  OG251_RS30180 (OG251_30190) - 6768049..6768750 (-) 702 WP_326680052.1 hypothetical protein -
  OG251_RS30185 - 6768969..6769817 (+) 849 WP_326680053.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40020.56 Da        Isoelectric Point: 6.8990

>NTDB_id=661845 OG251_RS30170 WP_326680050.1 6766047..6767177(+) (recA) [Streptomyces sp. NBC_01237]
MAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGTVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENSRNFLKDNPDLANEIE
RKILDKLGVGIRPDKDKAKTEAEPATDAAATTDGAAKAAPASATKAKPTKAAAAKS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=661845 OG251_RS30170 WP_326680050.1 6766047..6767177(+) (recA) [Streptomyces sp. NBC_01237]
ATGGCAGGAAACGACCGCGAGAAGGCGTTGGACGCCGCACTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCGATCGAGGTGATCCCCACCGGGTCGACCGCGCTCGACGTCGCACTCGGCGTCG
GCGGCCTGCCGCGTGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGCAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGCTCGGCGGCACGGTGGCCTTCATCGACGCCGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCGCTGGAAATCGTGGACATGCTGATCC
GCTCCGGTGCCCTCGACCTGATCGTCATCGACTCCGTCGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGT
GACTCGCACGTGGGTCTGCAGGCCCGTCTGATGAGCCAGGCCCTCCGTAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGGATCGAGACGCTGAAGGACGGTACCGACGCCGTCGGTAAC
CGCACCCGTGTCAAGGTCGTGAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
AATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGATCAGCTCGGCCAGGGCAAGGAGAACTCCCGCAACTTCCTCAAGGACAACCCCGATCTCGCCAATGAGATCGAG
AGGAAGATCCTCGACAAGCTGGGTGTCGGCATCCGGCCGGACAAGGACAAGGCCAAGACAGAGGCCGAACCGGCCACGGA
CGCGGCGGCGACCACCGACGGTGCGGCGAAGGCGGCACCCGCGTCGGCCACCAAGGCCAAGCCGACCAAGGCCGCGGCGG
CAAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

64.183

92.819

0.596
  recA Staphylococcus aureus strain ATCC 12600

65.015

91.223

0.593
  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.245

0.58
  recA Acinetobacter baumannii D1279779

67.492

85.904

0.58
  recA Acinetobacter nosocomialis M2

67.183

85.904

0.577
  recA Neisseria gonorrhoeae strain FA1090

67.601

85.372

0.577
  recA Neisseria gonorrhoeae MS11

67.601

85.372

0.577
  recA Vibrio cholerae strain A1552

63.265

91.223

0.577
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.265

91.223

0.577
  recA Acinetobacter baylyi ADP1

66.667

86.17

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

86.702

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

62.974

91.223

0.574
  recA Streptococcus thermophilus LMD-9

60.399

93.351

0.564
  recA Streptococcus mutans UA159

60.227

93.617

0.564
  recA Streptococcus pyogenes NZ131

63.333

87.766

0.556
  recA Helicobacter pylori strain NCTC11637

60.819

90.957

0.553
  recA Helicobacter pylori 26695

60.819

90.957

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

86.968

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.727

87.766

0.551
  recA Streptococcus mitis NCTC 12261

61.934

88.032

0.545
  recA Streptococcus mitis SK321

61.934

88.032

0.545
  recA Streptococcus thermophilus LMG 18311

63.077

86.436

0.545
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.436

0.543
  recA Streptococcus pneumoniae TIGR4

61.329

88.032

0.54
  recA Streptococcus pneumoniae D39

61.329

88.032

0.54
  recA Streptococcus pneumoniae Rx1

61.329

88.032

0.54
  recA Streptococcus pneumoniae R6

61.329

88.032

0.54
  recA Streptococcus pneumoniae R36A

61.329

88.032

0.54
  recA Glaesserella parasuis strain SC1401

63.043

85.638

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

86.968

0.505