Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LBPC_RS00050 Genome accession   NZ_AP012541
Coordinates   11339..11935 (+) Length   198 a.a.
NCBI ID   WP_003662304.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6339..16935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBPC_RS00030 (LBPC_0007) gyrA 6840..9461 (+) 2622 WP_003662307.1 DNA gyrase subunit A -
  LBPC_RS00035 (LBPC_0008) deoC 9566..10270 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  LBPC_RS00040 (LBPC_0009) ssb 10453..10884 (+) 432 WP_003662305.1 single-stranded DNA-binding protein -
  LBPC_RS00045 (LBPC_0010) rpsF 11012..11308 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  LBPC_RS00050 (LBPC_0011) ssb 11339..11935 (+) 597 WP_003662304.1 single-stranded DNA-binding protein Machinery gene
  LBPC_RS00055 (LBPC_0012) rpsR 12022..12258 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LBPC_RS00060 (LBPC_0013) - 12705..13625 (-) 921 WP_003574021.1 IS30 family transposase -
  LBPC_RS00065 (LBPC_0014) - 13755..15233 (+) 1479 WP_016377483.1 cytochrome ubiquinol oxidase subunit I -
  LBPC_RS00070 (LBPC_0015) cydB 15226..16245 (+) 1020 WP_003662302.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21148.91 Da        Isoelectric Point: 4.9056

>NTDB_id=65290 LBPC_RS00050 WP_003662304.1 11339..11935(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=65290 LBPC_RS00050 WP_003662304.1 11339..11935(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment