Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG996_RS13245 Genome accession   NZ_CP107971
Coordinates   2912064..2913191 (-) Length   375 a.a.
NCBI ID   WP_266522414.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2907064..2918191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG996_RS13225 (OG996_13225) - 2908097..2909701 (+) 1605 WP_328549988.1 FAD-dependent monooxygenase -
  OG996_RS13230 (OG996_13230) - 2909945..2910493 (+) 549 WP_266522420.1 cysteine dioxygenase -
  OG996_RS13235 (OG996_13235) - 2910490..2910921 (+) 432 WP_266522418.1 rhodanese-like domain-containing protein -
  OG996_RS13240 (OG996_13240) recX 2911115..2912062 (-) 948 WP_266522416.1 recombination regulator RecX -
  OG996_RS13245 (OG996_13245) recA 2912064..2913191 (-) 1128 WP_266522414.1 recombinase RecA Machinery gene
  OG996_RS13250 (OG996_13250) - 2913576..2914367 (+) 792 WP_328549989.1 hypothetical protein -
  OG996_RS13255 (OG996_13255) - 2914454..2915755 (-) 1302 WP_266590367.1 AI-2E family transporter -
  OG996_RS13260 (OG996_13260) - 2915816..2916010 (-) 195 WP_266522404.1 DUF3046 domain-containing protein -
  OG996_RS13265 (OG996_13265) - 2916091..2917035 (+) 945 WP_266926557.1 hypothetical protein -
  OG996_RS13270 (OG996_13270) - 2917048..2917356 (-) 309 WP_266590365.1 AzlD domain-containing protein -
  OG996_RS13275 (OG996_13275) - 2917353..2918186 (-) 834 WP_266522399.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39805.34 Da        Isoelectric Point: 6.1840

>NTDB_id=650487 OG996_RS13245 WP_266522414.1 2912064..2913191(-) (recA) [Streptomyces sp. NBC_00366]
MAGTDREKALDAALAQIERQFGKGAVMRMGERPNEPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGQVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRMDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEEPTAEPGADAAAVSATADDAAKTVPAPAAKAAKTKAPAAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=650487 OG996_RS13245 WP_266522414.1 2912064..2913191(-) (recA) [Streptomyces sp. NBC_00366]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTCAT
GCGCATGGGCGAGCGGCCGAACGAGCCCATCGAGGTCATCCCCACCGGGTCGACCGCACTCGACGTCGCGCTCGGCGTCG
GTGGCATCCCGCGCGGCCGCGTGGTGGAGGTGTACGGACCGGAGTCCTCCGGCAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCGCAGAAGGCCGGCGGCCAGGTCGCCTTCATCGACGCGGAGCACGCTCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAAATCGTGGACATGCTGGTCC
GCTCCGGCGCACTCGACCTGATCGTCATCGACTCCGTCGCCGCGCTCGTCCCGCGTGCGGAGATCGAGGGCGAGATGGGC
GACAGCCATGTCGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTCCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
GACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACGGGTGGCCGGG
CACTGAAGTTCTACGCCTCGGTGCGTATGGACATCCGCCGCATCGAGACCCTGAAGGACGGCACGGACGCGGTGGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGAGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTGAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTGGGCGTGCGGCCCGAAGAGCCCACCGCCGAGCCGGGTGCGGACGCCGCCGCCGT
CTCCGCCACCGCGGACGACGCCGCGAAGACGGTGCCCGCACCGGCGGCCAAGGCCGCCAAGACCAAGGCACCGGCTGCAA
AGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.497

91.2

0.597
  recA Neisseria gonorrhoeae strain FA1090

65.774

89.6

0.589
  recA Neisseria gonorrhoeae MS11

65.774

89.6

0.589
  recA Vibrio cholerae strain A1552

62.751

93.067

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.751

93.067

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

63.93

90.933

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

86.933

0.581
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.467

0.579
  recA Staphylococcus aureus strain ATCC 12600

66.258

86.933

0.576
  recA Acinetobacter baumannii D1279779

66.563

86.133

0.573
  recA Acinetobacter baylyi ADP1

66.563

86.133

0.573
  recA Acinetobacter nosocomialis M2

66.254

86.133

0.571
  recA Streptococcus mitis NCTC 12261

60.345

92.8

0.56
  recA Helicobacter pylori strain NCTC11637

61.471

90.667

0.557
  recA Helicobacter pylori 26695

61.471

90.667

0.557
  recA Streptococcus thermophilus LMG 18311

60.411

90.933

0.549
  recA Streptococcus mutans UA159

62.236

88.267

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

86.933

0.549
  recA Streptococcus pyogenes NZ131

62.424

88

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

87.733

0.547
  recA Streptococcus thermophilus LMD-9

61.631

88.267

0.544
  recA Lactococcus lactis subsp. cremoris KW2

61.329

88.267

0.541
  recA Streptococcus mitis SK321

61.329

88.267

0.541
  recA Streptococcus pneumoniae R6

61.027

88.267

0.539
  recA Streptococcus pneumoniae R36A

61.027

88.267

0.539
  recA Streptococcus pneumoniae Rx1

61.027

88.267

0.539
  recA Streptococcus pneumoniae D39

61.027

88.267

0.539
  recA Streptococcus pneumoniae TIGR4

61.027

88.267

0.539
  recA Glaesserella parasuis strain SC1401

62.422

85.867

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

85.333

0.504