Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG917_RS25765 Genome accession   NZ_CP107948
Coordinates   5748567..5749694 (+) Length   375 a.a.
NCBI ID   WP_328319982.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5743567..5754694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS25750 (OG917_25755) - 5745789..5746703 (-) 915 WP_328319980.1 hypothetical protein -
  OG917_RS25755 (OG917_25760) - 5746783..5746977 (+) 195 WP_328319981.1 DUF3046 domain-containing protein -
  OG917_RS25760 (OG917_25765) - 5747201..5748370 (+) 1170 WP_328322180.1 AI-2E family transporter -
  OG917_RS25765 (OG917_25770) recA 5748567..5749694 (+) 1128 WP_328319982.1 recombinase RecA Machinery gene
  OG917_RS25770 (OG917_25775) recX 5749698..5750357 (+) 660 WP_328319983.1 recombination regulator RecX -
  OG917_RS25775 (OG917_25780) - 5750586..5750975 (-) 390 WP_328319984.1 rhodanese-like domain-containing protein -
  OG917_RS25780 (OG917_25785) - 5750972..5751511 (-) 540 WP_328319985.1 cysteine dioxygenase -
  OG917_RS25785 (OG917_25790) - 5751721..5753460 (-) 1740 WP_328319986.1 FAD-dependent monooxygenase -
  OG917_RS25790 (OG917_25795) - 5753787..5754644 (-) 858 WP_328319987.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39897.42 Da        Isoelectric Point: 5.9157

>NTDB_id=649955 OG917_RS25765 WP_328319982.1 5748567..5749694(+) (recA) [Streptomyces sp. NBC_00388]
MAAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHA
VANAQRLGGQVAFIDAEHALDPEYARKLGVDIDNLILSQPDNGEQALEIVDMLIRSGALDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKITGAMNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVG
NRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEI
EKKILEKLGIGVRREAELGTGADTADAVVTDEAAKTVPAPAGGKAKTAKAATAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=649955 OG917_RS25765 WP_328319982.1 5748567..5749694(+) (recA) [Streptomyces sp. NBC_00388]
ATGGCAGCAGGCAACGACCGCGAGAAGGCGCTGGACGCCGCTCTCGCCCAGATTGAACGGCAATTCGGCAAGGGCGCGGT
GATGCGCCTGGGCGAGCGGCCCAACGAGCCCATCGAGGTTATCCCCACCGGGTCGACCGCCCTCGACGTGGCGCTCGGTG
TCGGCGGTCTGCCGCGCGGCCGGGTGGTCGAGGTGTACGGGCCGGAGTCCTCCGGCAAGACGACGCTGACGCTGCACGCC
GTCGCGAACGCACAGCGGCTCGGCGGCCAGGTGGCCTTCATCGACGCCGAGCACGCCCTCGACCCCGAGTACGCGAGGAA
GCTCGGCGTCGACATCGACAACCTGATCCTGTCGCAGCCGGACAACGGCGAGCAGGCGCTGGAAATCGTCGACATGCTGA
TCCGCTCCGGCGCGCTCGACCTGGTCGTCATCGACTCCGTGGCGGCCCTGGTGCCGCGTGCTGAGATCGAGGGCGAGATG
GGTGACTCGCACGTGGGTCTGCAGGCCCGGCTGATGAGCCAGGCGCTCCGCAAGATCACCGGCGCGATGAACCAGTCCAA
GACCACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTCATGTTCGGCTCCCCGGAGACCACCACCGGTGGCC
GGGCGCTGAAGTTCTACGCCTCGGTGCGGCTCGACATCCGCCGGATCGAGACCCTGAAGGACGGCACCGACGCGGTCGGA
AACCGCACCCGCGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCA
GGGCATCAGCCGTGAGGGCGGGCTGATCGACATGGGCGTGGAGAACGGCTTCGTGCGCAAGGCGGGGGCCTGGTACACGT
ACGAGGGCGACCAGCTCGGACAGGGCAAGGAGAACGCCCGCAACTTCCTGAAGGACAACCCCGATCTCGCCAACGAGATC
GAGAAGAAGATCCTGGAGAAGCTGGGTATCGGTGTCCGGCGGGAGGCCGAGCTGGGAACGGGCGCGGACACCGCGGACGC
CGTGGTGACCGACGAGGCCGCCAAGACGGTGCCCGCTCCGGCCGGGGGCAAGGCCAAGACGGCCAAGGCCGCCACGGCCA
AGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter nosocomialis M2

63.977

92.533

0.592
  recA Staphylococcus aureus strain ATCC 12600

68.098

86.933

0.592
  recA Pseudomonas stutzeri DSM 10701

64.912

91.2

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

86.933

0.589
  recA Neisseria gonorrhoeae strain FA1090

68.536

85.6

0.587
  recA Neisseria gonorrhoeae MS11

68.536

85.6

0.587
  recA Acinetobacter baumannii D1279779

67.183

86.133

0.579
  recA Ralstonia pseudosolanacearum GMI1000

69.01

83.467

0.576
  recA Acinetobacter baylyi ADP1

66.667

86.4

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

61.19

94.133

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

86.133

0.568
  recA Vibrio cholerae strain A1552

65.944

86.133

0.568
  recA Streptococcus mutans UA159

63.142

88.267

0.557
  recA Streptococcus pyogenes NZ131

63.333

88

0.557
  recA Streptococcus thermophilus LMG 18311

62.538

88.267

0.552
  recA Streptococcus thermophilus LMD-9

62.538

88.267

0.552
  recA Streptococcus mitis NCTC 12261

62.236

88.267

0.549
  recA Streptococcus mitis SK321

62.236

88.267

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

87.2

0.549
  recA Helicobacter pylori strain NCTC11637

62.424

88

0.549
  recA Helicobacter pylori 26695

62.424

88

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

88

0.549
  recA Streptococcus pneumoniae D39

61.934

88.267

0.547
  recA Streptococcus pneumoniae TIGR4

61.934

88.267

0.547
  recA Streptococcus pneumoniae Rx1

61.934

88.267

0.547
  recA Streptococcus pneumoniae R36A

61.934

88.267

0.547
  recA Streptococcus pneumoniae R6

61.934

88.267

0.547
  recA Lactococcus lactis subsp. cremoris KW2

63.077

86.667

0.547
  recA Glaesserella parasuis strain SC1401

63.043

85.867

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.385

85.867

0.501