Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OHA50_RS44950 Genome accession   NZ_CP107750
Coordinates   9927694..9928776 (-) Length   360 a.a.
NCBI ID   WP_327668345.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9922694..9933776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA50_RS44925 (OHA50_44950) - 9923000..9923278 (+) 279 WP_327668348.1 hypothetical protein -
  OHA50_RS44930 (OHA50_44955) - 9923445..9924407 (+) 963 WP_327665697.1 zinc-binding dehydrogenase -
  OHA50_RS44935 (OHA50_44960) - 9924334..9925350 (-) 1017 WP_327668347.1 LysR substrate-binding domain-containing protein -
  OHA50_RS44940 (OHA50_44965) - 9925488..9926309 (+) 822 WP_327668346.1 alpha/beta hydrolase -
  OHA50_RS44945 (OHA50_44970) - 9926334..9927368 (+) 1035 WP_327675267.1 nitronate monooxygenase -
  OHA50_RS44950 (OHA50_44975) recA 9927694..9928776 (-) 1083 WP_327668345.1 recombinase RecA Machinery gene
  OHA50_RS44955 (OHA50_44980) - 9929177..9930406 (+) 1230 WP_327668344.1 IS701 family transposase -
  OHA50_RS44960 (OHA50_44985) - 9930629..9931174 (+) 546 WP_327668343.1 helix-turn-helix domain-containing protein -
  OHA50_RS44965 (OHA50_44990) - 9931171..9931725 (+) 555 WP_327668342.1 transposase -
  OHA50_RS44970 (OHA50_44995) - 9931754..9932131 (-) 378 WP_327665701.1 MerR family transcriptional regulator -
  OHA50_RS44975 (OHA50_45000) - 9932207..9932935 (+) 729 WP_327668341.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38222.53 Da        Isoelectric Point: 5.8334

>NTDB_id=645649 OHA50_RS44950 WP_327668345.1 9927694..9928776(-) (recA) [Streptomyces sp. NBC_00618]
MAGTDHEKALDTALAQIERKYGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGQVAFIDAEHALDPEYAKKLGVDTDNLILSQPDNGEQALEIADILIRSGAIDLIVVDSVAALVPRAEIEGEMG
DSHMGLQARLMSQALRKITSALSQTRTTVIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVDNGFVRKAGAWYTYEGDQLGQGKENARNFLKDKPDLAGEIE
KKILEKLGIGVPAKAAVAEAEGTGAVPVPDAARTSAGNPA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=645649 OHA50_RS44950 WP_327668345.1 9927694..9928776(-) (recA) [Streptomyces sp. NBC_00618]
ATGGCGGGAACCGACCACGAAAAGGCGCTGGACACCGCGCTCGCACAGATCGAACGGAAATACGGCAAGGGCGCGGTCAT
GCGCCTCGGCGAGCGGCCCAATGAGCCCATCGAGGTGATCCCTACCGGATCGACCGCGCTGGACGTGGCGCTCGGTGTGG
GCGGTCTGCCCCGCGGCCGCGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGCAAGACGACGCTGACGTTGCACGCGGTG
GCCAACGCGCAGAAGGCAGGCGGCCAGGTGGCGTTCATCGACGCCGAGCACGCACTGGACCCGGAGTACGCCAAGAAGCT
CGGCGTCGACACCGACAACCTCATCCTGTCCCAGCCGGACAACGGCGAACAGGCGCTGGAGATCGCCGACATCCTGATCC
GCTCCGGCGCGATCGACCTGATCGTGGTCGACTCCGTCGCGGCCCTGGTGCCACGCGCCGAGATCGAGGGCGAGATGGGC
GACTCCCACATGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTCCGAAAGATCACCAGCGCGCTCAGCCAGACGAGGAC
GACGGTCATCTTCATCAACCAGCTGCGCGAGAAGATCGGAGTCATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGCG
CACTGAAGTTCTACTCCTCGGTGCGGCTCGACATCCGCCGCATCGAGACCCTGAAGGACGGCACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGACAGGG
CATCTCCCGCGAGGGCGGCCTGATCGACATGGGCGTCGACAACGGCTTCGTCCGCAAAGCGGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGTAACTTCCTGAAGGACAAACCCGATCTCGCCGGCGAGATCGAG
AAGAAGATCCTCGAAAAGCTCGGAATCGGGGTACCGGCGAAGGCCGCAGTCGCCGAGGCTGAGGGCACGGGCGCCGTCCC
GGTCCCCGATGCCGCACGGACCTCGGCGGGAAACCCCGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

68.438

88.889

0.608
  recA Neisseria gonorrhoeae strain FA1090

68.438

88.889

0.608
  recA Staphylococcus aureus strain ATCC 12600

66.258

90.556

0.6
  recA Acinetobacter baumannii D1279779

66.254

89.722

0.594
  recA Acinetobacter baylyi ADP1

66.254

89.722

0.594
  recA Ralstonia pseudosolanacearum GMI1000

68.051

86.944

0.592
  recA Acinetobacter nosocomialis M2

65.944

89.722

0.592
  recA Pseudomonas stutzeri DSM 10701

65.635

89.722

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

91.389

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

90.556

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

89.722

0.581
  recA Vibrio cholerae strain A1552

64.706

89.722

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

62.918

91.389

0.575
  recA Streptococcus mutans UA159

62.236

91.944

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

90.556

0.572
  recA Helicobacter pylori strain NCTC11637

63.077

90.278

0.569
  recA Helicobacter pylori 26695

63.077

90.278

0.569
  recA Streptococcus pyogenes NZ131

62.121

91.667

0.569
  recA Glaesserella parasuis strain SC1401

63.551

89.167

0.567
  recA Streptococcus thermophilus LMD-9

61.329

91.944

0.564
  recA Streptococcus thermophilus LMG 18311

61.329

91.944

0.564
  recA Streptococcus pneumoniae TIGR4

60.725

91.944

0.558
  recA Streptococcus mitis SK321

60.725

91.944

0.558
  recA Streptococcus mitis NCTC 12261

60.725

91.944

0.558
  recA Streptococcus pneumoniae R6

60.725

91.944

0.558
  recA Streptococcus pneumoniae R36A

60.725

91.944

0.558
  recA Streptococcus pneumoniae Rx1

60.725

91.944

0.558
  recA Streptococcus pneumoniae D39

60.725

91.944

0.558
  recA Lactococcus lactis subsp. cremoris KW2

60.615

90.278

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

89.167

0.533