Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO014_RS17005 Genome accession   NZ_CP087300
Coordinates   3396650..3397177 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain OC061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391650..3402177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS16985 - 3391839..3392714 (-) 876 WP_258583678.1 hypothetical protein -
  LO014_RS16990 aroB 3392730..3393812 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO014_RS16995 aroK 3393841..3394410 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO014_RS17000 pilQ 3394422..3396587 (-) 2166 WP_001017027.1 type IV pilus secretin PilQ Machinery gene
  LO014_RS17005 pilP 3396650..3397177 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO014_RS17010 pilO 3397188..3397928 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO014_RS17015 pilN 3397925..3398566 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  LO014_RS17020 pilM 3398566..3399624 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=628474 LO014_RS17005 WP_000695065.1 3396650..3397177(-) (pilP) [Acinetobacter baumannii strain OC061]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628474 LO014_RS17005 WP_000695065.1 3396650..3397177(-) (pilP) [Acinetobacter baumannii strain OC061]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTAGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714