Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LIO31_RS09580 Genome accession   NZ_CP085086
Coordinates   1918385..1919752 (-) Length   455 a.a.
NCBI ID   WP_024405405.1    Uniprot ID   A0AAP6A8X6
Organism   Streptococcus suis strain Ssuis_MA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1913385..1924752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS09555 - 1914147..1915427 (-) 1281 WP_024405402.1 MFS transporter -
  LIO31_RS09560 - 1915514..1916173 (-) 660 WP_024405403.1 LiaF transmembrane domain-containing protein -
  LIO31_RS09565 - 1916178..1916624 (-) 447 WP_024405404.1 LytTR family DNA-binding domain-containing protein -
  LIO31_RS09570 - 1916801..1917559 (-) 759 WP_002939965.1 TIGR00266 family protein -
  LIO31_RS09575 - 1917767..1918261 (-) 495 WP_024403073.1 carbonic anhydrase -
  LIO31_RS09580 radA 1918385..1919752 (-) 1368 WP_024405405.1 DNA repair protein RadA Machinery gene
  LIO31_RS09585 - 1919759..1920291 (-) 533 Protein_1851 histidine phosphatase family protein -
  LIO31_RS09590 - 1920298..1920741 (-) 444 WP_002939955.1 dUTP diphosphatase -
  LIO31_RS09595 - 1920843..1922627 (-) 1785 WP_074389091.1 ABC transporter ATP-binding protein -
  LIO31_RS09600 - 1922628..1924334 (-) 1707 WP_074389922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49891.39 Da        Isoelectric Point: 6.1911

>NTDB_id=615242 LIO31_RS09580 WP_024405405.1 1918385..1919752(-) (radA) [Streptococcus suis strain Ssuis_MA6]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKMPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=615242 LIO31_RS09580 WP_024405405.1 1918385..1919752(-) (radA) [Streptococcus suis strain Ssuis_MA6]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACGCGCCCTATGAAACTCAATGAAGTTTCCTCTATTCAAGTGGCTCGTACCAAGACCAACATGGAGGAGTTCAAC
CGAGTCCTCGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGGAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCAATCCAGACCATCATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTAGCTGGACCGCGGACCTTGGAGCATATGGTGGATACTGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTTCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGACGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGATGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624