Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH369_RS07680 Genome accession   NZ_CP085060
Coordinates   1623180..1623809 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain P30_L1_05.20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1618180..1628809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH369_RS07660 (LH369_07660) ycbZ 1618581..1620341 (-) 1761 WP_000152888.1 AAA family ATPase -
  LH369_RS07665 (LH369_07665) matP 1620527..1620979 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LH369_RS07670 (LH369_07670) ompA 1621055..1622095 (-) 1041 WP_000750416.1 porin OmpA -
  LH369_RS07675 (LH369_07675) sulA 1622452..1622961 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LH369_RS07680 (LH369_07680) sxy/tfoX 1623180..1623809 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LH369_RS07685 (LH369_07685) yccS 1623772..1625934 (-) 2163 WP_000875058.1 YccS family putative transporter -
  LH369_RS07690 (LH369_07690) yccF 1625944..1626390 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LH369_RS07695 (LH369_07695) helD 1626513..1628567 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=614951 LH369_RS07680 WP_000839153.1 1623180..1623809(+) (sxy/tfoX) [Escherichia coli strain P30_L1_05.20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=614951 LH369_RS07680 WP_000839153.1 1623180..1623809(+) (sxy/tfoX) [Escherichia coli strain P30_L1_05.20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1