Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KM389_RS00220 Genome accession   NZ_CP076213
Coordinates   40417..40701 (-) Length   94 a.a.
NCBI ID   WP_000843034.1    Uniprot ID   -
Organism   Bacillus anthracis strain A0777     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35417..45701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM389_RS00185 (KM389_00185) tmk 35571..36197 (+) 627 WP_000677237.1 dTMP kinase -
  KM389_RS00190 (KM389_00190) holB 36233..37216 (+) 984 WP_000169560.1 DNA polymerase III subunit delta' -
  KM389_RS00195 (KM389_00195) - 37222..38049 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  KM389_RS00200 (KM389_00200) yabA 38064..38414 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  KM389_RS00205 (KM389_00205) - 38535..39275 (+) 741 WP_001055363.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KM389_RS00210 (KM389_00210) - 39262..39552 (+) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  KM389_RS00215 (KM389_00215) rsmI 39521..40396 (+) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KM389_RS00220 (KM389_00220) abrB 40417..40701 (-) 285 WP_000843034.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KM389_RS00225 (KM389_00225) metG 41165..43174 (+) 2010 WP_073806352.1 methionine--tRNA ligase -
  KM389_RS00230 (KM389_00230) - 43340..44107 (+) 768 WP_000895823.1 TatD family hydrolase -
  KM389_RS00235 (KM389_00235) rnmV 44322..44879 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10564.29 Da        Isoelectric Point: 4.7174

>NTDB_id=573596 KM389_RS00220 WP_000843034.1 40417..40701(-) (abrB) [Bacillus anthracis strain A0777]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEISDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=573596 KM389_RS00220 WP_000843034.1 40417..40701(-) (abrB) [Bacillus anthracis strain A0777]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAATATCTGATGGTAACCTATTTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84