Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IE382_RS19335 Genome accession   NZ_CP061870
Coordinates   3561282..3561926 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556282..3566926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS19300 (IE382_19200) mrpB 3557474..3557905 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  IE382_RS19305 (IE382_19205) mrpC 3557905..3558246 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  IE382_RS19310 (IE382_19210) mrpD 3558239..3559720 (+) 1482 WP_144458973.1 Na+/H+ antiporter subunit D -
  IE382_RS19315 (IE382_19215) mrpE 3559726..3560202 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  IE382_RS19320 (IE382_19220) mrpF 3560202..3560486 (+) 285 WP_041052851.1 Na(+)/H(+) antiporter subunit F1 -
  IE382_RS19325 (IE382_19225) mnhG 3560470..3560844 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  IE382_RS19330 (IE382_19230) yuxO 3560883..3561263 (-) 381 WP_041052848.1 hotdog fold thioesterase -
  IE382_RS19335 (IE382_19235) comA 3561282..3561926 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IE382_RS19340 (IE382_19240) comP 3562007..3564319 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  IE382_RS19345 (IE382_19245) comX 3564335..3564556 (-) 222 WP_014480704.1 competence pheromone ComX -
  IE382_RS19350 (IE382_19250) - 3564558..3565421 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  IE382_RS19355 (IE382_19255) degQ 3565606..3565746 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IE382_RS19360 (IE382_19260) - 3565968..3566093 (+) 126 WP_003228793.1 hypothetical protein -
  IE382_RS19365 (IE382_19265) - 3566207..3566575 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=485463 IE382_RS19335 WP_003220716.1 3561282..3561926(-) (comA) [Bacillus subtilis strain FX-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=485463 IE382_RS19335 WP_003220716.1 3561282..3561926(-) (comA) [Bacillus subtilis strain FX-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1