Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   IBB94_RS08770 Genome accession   NZ_CP061024
Coordinates   1709109..1710065 (-) Length   318 a.a.
NCBI ID   WP_207560110.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13498     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704109..1715065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB94_RS08740 (IBB94_08750) - 1704138..1705394 (+) 1257 WP_011681055.1 ISL3-like element ISSth1 family transposase -
  IBB94_RS08745 (IBB94_08755) - 1705470..1706132 (-) 663 WP_011227583.1 type II CAAX endopeptidase family protein -
  IBB94_RS08750 (IBB94_08760) - 1706229..1706672 (-) 444 WP_084829882.1 CAAX protease -
  IBB94_RS10160 - 1706746..1707171 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  IBB94_RS08760 (IBB94_08770) - 1707414..1707611 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  IBB94_RS08765 (IBB94_08775) - 1707860..1709053 (-) 1194 WP_014608740.1 acetate kinase -
  IBB94_RS08770 (IBB94_08780) comYH 1709109..1710065 (-) 957 WP_207560110.1 class I SAM-dependent methyltransferase Machinery gene
  IBB94_RS08775 (IBB94_08785) comGG 1710110..1710427 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  IBB94_RS08780 (IBB94_08790) comYF 1710405..1710842 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBB94_RS08785 (IBB94_08795) comGE 1710826..1711119 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBB94_RS08790 (IBB94_08800) comYD 1711091..1711519 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBB94_RS08795 (IBB94_08805) comYC 1711479..1711805 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBB94_RS08800 (IBB94_08810) comYB 1711802..1712902 (-) 1101 WP_207560111.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBB94_RS08805 (IBB94_08815) comGA/cglA/cilD 1712784..1713725 (-) 942 WP_207560109.1 competence type IV pilus ATPase ComGA Machinery gene
  IBB94_RS08810 (IBB94_08820) - 1713806..1714168 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35931.17 Da        Isoelectric Point: 4.7891

>NTDB_id=479784 IBB94_RS08770 WP_207560110.1 1709109..1710065(-) (comYH) [Streptococcus thermophilus strain 13498]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAEILLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKYIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=479784 IBB94_RS08770 WP_207560110.1 1709109..1710065(-) (comYH) [Streptococcus thermophilus strain 13498]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAATTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTATATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.254

99.057

0.676
  comYH Streptococcus mutans UA140

68.254

99.057

0.676