Detailed information NTG0046768

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPSAT_RS00200
• Genome accession: NC_017359
• Coordinates: 34392..35357 (+)
• Length: 321 a.a.
• NCBI ID: WP_012443264.1
• Uniprot ID: -
• Organism: Helicobacter pylori Sat464
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29392..40357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSAT_RS00170 (HPSAT_00170)	panD	30802..31152 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HPSAT_RS00175 (HPSAT_00175)	-	31163..31465 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPSAT_RS00180 (HPSAT_00180)	-	31465..32460 (+)	996	WP_000468448.1	PDZ domain-containing protein	-
HPSAT_RS00185 (HPSAT_00185)	comB6	32468..33523 (+)	1056	WP_000786689.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSAT_RS00190 (HPSAT_00190)	comB7	33539..33652 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HPSAT_RS00195 (HPSAT_00195)	comB8	33649..34392 (+)	744	WP_000660544.1	type IV secretion system protein	Machinery gene
HPSAT_RS00200 (HPSAT_00200)	comB9	34392..35357 (+)	966	WP_012443264.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSAT_RS00205 (HPSAT_00205)	comB10	35350..36486 (+)	1137	WP_001045867.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSAT_RS00210 (HPSAT_00210)	-	36556..37968 (+)	1413	WP_000694832.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPSAT_RS00215 (HPSAT_00215)	gmd	37983..39128 (+)	1146	WP_000659855.1	GDP-mannose 4,6-dehydratase	-
HPSAT_RS00220 (HPSAT_00220)	-	39121..40053 (+)	933	WP_001002423.1	GDP-L-fucose synthase family protein	-
HPSAT_RS07965 (HPSAT_00225)	-	40078..40236 (-)	159	WP_014534345.1	hypothetical protein	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36973.47 Da
• Isoelectric Point: 9.3498

>NTDB_id=46768 HPSAT_RS00200 WP_012443264.1 34392..35357(+) (comB9) [Helicobacter pylori Sat464]
MRKVLYALVGFLLAFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=46768 HPSAT_RS00200 WP_012443264.1 34392..35357(+) (comB9) [Helicobacter pylori Sat464]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAGAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCAAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACGAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.966	100	0.947