Detailed information NTG0045347

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HPAKL86_RS06345
• Genome accession: NC_019563
• Coordinates: 1310413..1311456 (-)
• Length: 347 a.a.
• NCBI ID: WP_000963126.1
• Uniprot ID: -
• Organism: Helicobacter pylori Aklavik86
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1305413..1316456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPAKL86_RS06315 (HPAKL86_06205)	-	1305662..1306774 (+)	1113	WP_015087544.1	glycosyltransferase family 8 protein	-
HPAKL86_RS06320 (HPAKL86_06210)	-	1306771..1307727 (-)	957	WP_015087545.1	PDC sensor domain-containing protein	-
HPAKL86_RS06325 (HPAKL86_06215)	-	1307748..1308236 (-)	489	WP_015087546.1	shikimate kinase	-
HPAKL86_RS06330 (HPAKL86_06220)	-	1308241..1308837 (-)	597	WP_015087547.1	AMIN domain-containing protein	-
HPAKL86_RS06335 (HPAKL86_06225)	-	1308853..1309128 (-)	276	WP_015087548.1	hypothetical protein	-
HPAKL86_RS06340 (HPAKL86_06230)	eno	1309121..1310401 (-)	1281	WP_015087549.1	phosphopyruvate hydratase	-
HPAKL86_RS06345 (HPAKL86_06235)	recA	1310413..1311456 (-)	1044	WP_000963126.1	recombinase RecA	Machinery gene
HPAKL86_RS06350 (HPAKL86_06240)	-	1311555..1312418 (+)	864	WP_015087550.1	menaquinone biosynthesis family protein	-
HPAKL86_RS06355 (HPAKL86_06245)	-	1312415..1313182 (-)	768	WP_015087551.1	hypothetical protein	-
HPAKL86_RS06360 (HPAKL86_06250)	-	1313266..1313847 (-)	582	WP_015087552.1	hypothetical protein	-
HPAKL86_RS06365 (HPAKL86_06255)	-	1313859..1314443 (-)	585	WP_015087553.1	hypothetical protein	-
HPAKL86_RS06370 (HPAKL86_06265)	-	1314544..1314750 (-)	207	WP_015087554.1	DUF4006 family protein	-
HPAKL86_RS06375 (HPAKL86_06270)	ccoP	1314761..1315639 (-)	879	WP_015087555.1	cytochrome-c oxidase, cbb3-type subunit III	-
HPAKL86_RS06380 (HPAKL86_06275)	-	1315641..1315859 (-)	219	WP_015087556.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37669.40 Da
• Isoelectric Point: 5.7176

>NTDB_id=45347 HPAKL86_RS06345 WP_000963126.1 1310413..1311456(-) (recA) [Helicobacter pylori Aklavik86]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=45347 HPAKL86_RS06345 WP_000963126.1 1310413..1311456(-) (recA) [Helicobacter pylori Aklavik86]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATC
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
GCTAGGCGTGGATACGGAAAATTTACTTGTTTCTCAACCTGATACAGGCGAGCAAGCTTTAGAAATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACCACTCTCATTTTTATCAACCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTTTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGATATTGTGGATAAGAGTGGGGCATGGCTTA
GTTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTAAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGCATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (9-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori strain NCTC11637	99.424	100	0.994
recA	Helicobacter pylori 26695	99.424	100	0.994
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	78.963	94.524	0.746
recA	Staphylococcus aureus strain ATCC 12600	63.636	98.271	0.625
recA	Neisseria gonorrhoeae MS11	66.462	93.66	0.622
recA	Neisseria gonorrhoeae strain FA1090	66.462	93.66	0.622
recA	Acinetobacter nosocomialis M2	62.865	98.559	0.62
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.458	95.677	0.617
recA	Bacillus subtilis subsp. subtilis str. 168	65.231	93.66	0.611
recA	Acinetobacter baumannii D1279779	63.914	94.236	0.602
recA	Acinetobacter baylyi ADP1	63.609	94.236	0.599
recA	Ralstonia pseudosolanacearum GMI1000	61.905	96.83	0.599
recA	Pseudomonas stutzeri DSM 10701	60.526	98.559	0.597
recA	Vibrio cholerae strain A1552	61.31	96.83	0.594
recA	Vibrio cholerae O1 biovar El Tor strain E7946	61.31	96.83	0.594
recA	Glaesserella parasuis strain SC1401	60.671	94.524	0.573
recA	Streptococcus pneumoniae R6	55.84	100	0.565
recA	Streptococcus pneumoniae R36A	55.84	100	0.565
recA	Streptococcus pneumoniae Rx1	55.84	100	0.565
recA	Streptococcus pneumoniae D39	55.84	100	0.565
recA	Streptococcus pneumoniae TIGR4	55.84	100	0.565
recA	Latilactobacillus sakei subsp. sakei 23K	54.622	100	0.562
recA	Streptococcus pyogenes NZ131	57.576	95.101	0.548
recA	Lactococcus lactis subsp. cremoris KW2	57.751	94.813	0.548
recA	Streptococcus mitis NCTC 12261	57.447	94.813	0.545
recA	Streptococcus mitis SK321	57.447	94.813	0.545
recA	Streptococcus thermophilus LMD-9	56.667	95.101	0.539
recA	Streptococcus thermophilus LMG 18311	56.667	95.101	0.539
recA	Streptococcus mutans UA159	55.988	96.254	0.539
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.442	93.948	0.53