Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SYNPCCN_RS08865 Genome accession   NC_017052
Coordinates   1867676..1870018 (+) Length   780 a.a.
NCBI ID   WP_020862340.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. PCC-N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862676..1875018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCCN_RS08840 (SYNPCCN_1697) - 1863255..1864019 (+) 765 WP_010872895.1 iron uptake porin -
  SYNPCCN_RS08845 (SYNPCCN_1698) - 1864049..1864489 (+) 441 WP_010872896.1 hypothetical protein -
  SYNPCCN_RS08850 (SYNPCCN_1699) pilM 1864674..1865777 (+) 1104 WP_010872897.1 type IV pilus biogenesis protein PilM Machinery gene
  SYNPCCN_RS08855 (SYNPCCN_1700) pilN 1865859..1866713 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  SYNPCCN_RS08860 (SYNPCCN_1701) pilO 1866753..1867580 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  SYNPCCN_RS08865 (SYNPCCN_1702) pilQ 1867676..1870018 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene
  SYNPCCN_RS08870 (SYNPCCN_1703) - 1870027..1870851 (-) 825 WP_010872901.1 FkbM family methyltransferase -
  SYNPCCN_RS08875 (SYNPCCN_1704) - 1870871..1871605 (-) 735 WP_010872902.1 FkbM family methyltransferase -
  SYNPCCN_RS08880 (SYNPCCN_1705) tilS 1871672..1872664 (+) 993 WP_010872903.1 tRNA lysidine(34) synthetase TilS -
  SYNPCCN_RS08885 (SYNPCCN_1706) thrC 1872714..1873862 (-) 1149 WP_010872904.1 threonine synthase -
  SYNPCCN_RS08890 (SYNPCCN_1707) ndhC 1874145..1874507 (+) 363 WP_010872905.1 photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 84098.34 Da        Isoelectric Point: 4.3538

>NTDB_id=44489 SYNPCCN_RS08865 WP_020862340.1 1867676..1870018(+) (pilQ) [Synechocystis sp. PCC 6803 substr. PCC-N]
MKNFRFWLTTEIATCCLLALAPAQAETVSQSNTLDGDLRTAIAGDSSRDWLQFEKSLEQSLKQKEEIDSWKPSLELMQAK
SLVKPGQKLTNIELLVQELEALSDPLALNFPEPNQTSVAQMAPPSRPMPPPPAGSGQVMFPNPEIIIQQQGGVPQRGASP
QVGNPSILSPAVPVAPVRSRAVPPPVGDLAISNINASFDMIDLGQRGQVNVPSLVLREAPAREVLAVLTRYAGMNLIFTD
NQNNEGTPTPGTPPGGQVAPPQAQSTITLDIQNESVQDVFNYVLMASGLKASRRGNTIFAGANLLPSARNIITRTIRLNQ
ASAESVASTLASQGAEVNILFEGQEDVQLAENAPPRVIKQPPTLVPLTVQKPANDSSVLILEGLVVSTDPRLNTVTLVGE
PRNVELASSMITQMDARRRQVAVNVKIIDINLNNIQDYDSSFSFGIGDSFFVQDSGSAVMRFGDTAPVQEIDINNNLGRI
TNPPAIVNPFQDGEIFFDLNRITNIEVPLGPGTIPINFFTSGSGAVSNNPLFNGVTEFPIVEVDEQGLLTITQPEFGLPS
FYQYPKKFQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPVLEDVGLTLNVIVD
RIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGVVRLRDDQTFILSGIISELQRSTTSKVPILGDLP
VIGALFRQSTDTTDRSEVIILMTPKIIHDSTEAQFGFRYNPDAATAEFLRQKGFPVQAQP

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=44489 SYNPCCN_RS08865 WP_020862340.1 1867676..1870018(+) (pilQ) [Synechocystis sp. PCC 6803 substr. PCC-N]
GTGAAAAATTTTCGGTTTTGGTTAACAACGGAAATAGCGACCTGTTGCTTGTTGGCCCTAGCGCCTGCCCAGGCAGAAAC
GGTTTCCCAGTCAAATACTTTGGATGGAGATTTGCGGACGGCGATCGCCGGTGACTCAAGTCGAGATTGGCTACAGTTTG
AAAAGAGTTTGGAGCAGTCTCTCAAGCAAAAAGAAGAAATTGATTCTTGGAAACCATCATTGGAGTTGATGCAGGCTAAA
TCCCTTGTCAAACCAGGGCAAAAGTTGACGAATATTGAGTTGCTGGTGCAGGAGTTGGAAGCCTTATCCGACCCACTGGC
ATTAAATTTTCCAGAACCGAACCAGACCAGTGTTGCTCAAATGGCTCCCCCCAGCCGCCCTATGCCTCCCCCTCCAGCGG
GCAGTGGGCAGGTCATGTTTCCCAATCCCGAAATAATCATCCAACAGCAGGGTGGTGTGCCCCAACGTGGTGCCAGCCCT
CAGGTGGGAAATCCTAGCATTTTATCTCCTGCGGTACCTGTGGCTCCGGTACGTTCCCGGGCTGTGCCGCCACCAGTGGG
GGATTTGGCCATTTCCAACATCAATGCTTCCTTCGACATGATTGATCTTGGCCAAAGGGGTCAGGTTAACGTACCAAGCT
TGGTACTACGGGAGGCCCCAGCAAGGGAAGTTTTGGCTGTGCTAACCCGTTATGCTGGCATGAATCTAATTTTTACCGAT
AACCAAAACAATGAAGGCACTCCTACCCCAGGTACACCTCCCGGTGGTCAGGTTGCTCCTCCCCAAGCTCAGTCAACCAT
TACTCTGGACATTCAAAATGAAAGTGTTCAGGACGTTTTTAACTACGTTCTGATGGCCTCAGGGCTAAAAGCTAGTCGTC
GGGGTAACACAATTTTCGCTGGGGCTAATCTTTTGCCTTCGGCTCGAAATATTATTACCCGCACTATCCGGTTGAACCAG
GCTAGTGCTGAGTCTGTGGCCAGTACTTTGGCTTCTCAGGGTGCGGAAGTTAACATCCTATTTGAAGGTCAGGAAGATGT
TCAGTTGGCAGAAAATGCGCCGCCAAGGGTAATTAAGCAGCCTCCTACTCTAGTTCCCTTAACTGTTCAAAAACCAGCCA
ACGATTCTTCAGTTTTAATTCTGGAAGGGCTAGTGGTTAGCACTGATCCCCGTTTAAACACTGTAACCCTGGTGGGTGAA
CCCCGTAATGTGGAATTGGCTAGTTCCATGATTACTCAAATGGATGCTCGCCGCCGCCAAGTGGCAGTAAACGTCAAAAT
TATTGACATCAATCTTAATAATATTCAAGATTATGACAGCAGTTTTTCCTTTGGCATAGGAGATAGTTTCTTTGTCCAAG
ACAGTGGTTCTGCGGTCATGCGCTTTGGTGACACGGCTCCAGTTCAGGAAATTGATATCAACAATAACCTGGGGCGAATC
ACTAATCCACCTGCCATTGTTAATCCTTTTCAAGACGGAGAGATTTTCTTTGATCTTAATAGAATAACTAACATTGAAGT
GCCTCTTGGCCCAGGGACCATCCCCATAAATTTCTTCACATCAGGTTCTGGAGCCGTTTCCAACAATCCATTGTTTAATG
GAGTTACTGAATTTCCAATTGTGGAGGTAGATGAACAAGGTCTGTTAACAATCACCCAACCTGAGTTTGGTTTGCCATCT
TTTTATCAATATCCTAAAAAGTTTCAGGCACAAATTGACGCTCAAATACGTAGTGGGAATGCGAAAATTCTCACCGATCC
AACTTTGATTGTTCAAGAAGGCGAGGCTGCTCAAGTTAAGTTAACAGAATCTGTTATTGCCAGCGTTGATACGCAAGTTG
ATACCCAGGGAGATACAGCAGTTAGAACTATTACGCCGGTTCTGGAAGATGTTGGATTAACACTAAATGTCATAGTTGAT
CGAATTGATGACAATGGCTTTATTACTTTGCGCGTTAATCCAATCGTTGCATCTCCTGCTGGAACACAAGTATTTGATAG
TGGTGCTGGCGCCATCAACGAAATAACACTGATAAACAAAAGGGAACTTACTTCCGGTGTAGTTCGGCTGAGGGATGATC
AGACATTCATTCTATCTGGCATTATTTCGGAACTTCAACGTTCTACCACAAGTAAAGTTCCAATTCTAGGGGATTTACCG
GTGATTGGAGCATTGTTTAGGCAGTCCACAGACACAACAGACCGTTCGGAAGTTATTATTCTCATGACCCCCAAGATCAT
TCATGATAGTACAGAGGCGCAGTTTGGCTTCCGTTACAATCCTGACGCGGCTACGGCGGAATTCCTGCGGCAGAAAGGAT
TTCCCGTTCAGGCTCAGCCATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(576-748)

Bacterial type II/III secretion system short domain (Secretin_N)

(313-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment