Detailed information NTG0042515

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HPPC18_RS00775
• Genome accession: NC_017742
• Coordinates: 158339..159382 (+)
• Length: 347 a.a.
• NCBI ID: WP_000963114.1
• Uniprot ID: -
• Organism: Helicobacter pylori PeCan18
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 153339..164382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPC18_RS00740 (HPPC18_00735)	-	153398..153616 (+)	219	WP_001847091.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-
HPPC18_RS00745 (HPPC18_00740)	ccoP	153618..154496 (+)	879	WP_000346818.1	cytochrome-c oxidase, cbb3-type subunit III	-
HPPC18_RS00750 (HPPC18_00745)	-	154507..154713 (+)	207	WP_000670514.1	DUF4006 family protein	-
HPPC18_RS00755 (HPPC18_00755)	-	154814..155407 (+)	594	WP_000677488.1	hypothetical protein	-
HPPC18_RS00760 (HPPC18_00760)	-	155420..156001 (+)	582	WP_000660339.1	hypothetical protein	-
HPPC18_RS00765 (HPPC18_00765)	-	156613..157380 (+)	768	WP_000506385.1	hypothetical protein	-
HPPC18_RS00770 (HPPC18_00770)	-	157377..158240 (-)	864	WP_000626262.1	menaquinone biosynthesis family protein	-
HPPC18_RS00775 (HPPC18_00775)	recA	158339..159382 (+)	1044	WP_000963114.1	recombinase RecA	Machinery gene
HPPC18_RS00780 (HPPC18_00780)	eno	159394..160674 (+)	1281	WP_000955582.1	phosphopyruvate hydratase	-
HPPC18_RS00785 (HPPC18_00785)	-	160667..160942 (+)	276	WP_000146220.1	hypothetical protein	-
HPPC18_RS00790 (HPPC18_00790)	-	160959..161555 (+)	597	WP_000914516.1	AMIN domain-containing protein	-
HPPC18_RS00795 (HPPC18_00795)	-	161560..162048 (+)	489	WP_001164269.1	shikimate kinase	-
HPPC18_RS00800 (HPPC18_00800)	-	162070..163026 (+)	957	WP_000952307.1	PDC sensor domain-containing protein	-
HPPC18_RS00805 (HPPC18_00805)	-	163023..164159 (-)	1137	WP_000028826.1	glycosyltransferase family 8 protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37622.33 Da
• Isoelectric Point: 5.5216

>NTDB_id=42515 HPPC18_RS00775 WP_000963114.1 158339..159382(+) (recA) [Helicobacter pylori PeCan18]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=42515 HPPC18_RS00775 WP_000963114.1 158339..159382(+) (recA) [Helicobacter pylori PeCan18]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGTGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAACATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCAAGCACGGGAGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGTGGGGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTTTTGCATAAGATGAA
CACTACTCTCATTTTTATCAATCAAATAAGAATGAAGATCGGCATGACGGGTTATGGGAGTCCAGAGACCACAACCGGGG
GTAATGCCTTAAAATTTTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GTTACCAAGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTATTAAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATCGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterProScan.

• recA bacterial DNA recombination protein (RecA_N) (9-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori strain NCTC11637	98.559	100	0.986
recA	Helicobacter pylori 26695	97.983	100	0.98
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	77.744	94.524	0.735
recA	Staphylococcus aureus strain ATCC 12600	62.757	98.271	0.617
recA	Acinetobacter nosocomialis M2	62.281	98.559	0.614
recA	Neisseria gonorrhoeae MS11	65.538	93.66	0.614
recA	Neisseria gonorrhoeae strain FA1090	65.538	93.66	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	64.308	93.66	0.602
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.952	95.677	0.602
recA	Acinetobacter baumannii D1279779	63.303	94.236	0.597
recA	Acinetobacter baylyi ADP1	62.997	94.236	0.594
recA	Ralstonia pseudosolanacearum GMI1000	61.012	96.83	0.591
recA	Vibrio cholerae strain A1552	60.417	96.83	0.585
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.417	96.83	0.585
recA	Pseudomonas stutzeri DSM 10701	59.357	98.559	0.585
recA	Glaesserella parasuis strain SC1401	59.451	94.524	0.562
recA	Streptococcus pneumoniae R6	54.986	100	0.556
recA	Streptococcus pneumoniae R36A	54.986	100	0.556
recA	Streptococcus pneumoniae Rx1	54.986	100	0.556
recA	Streptococcus pneumoniae D39	54.986	100	0.556
recA	Streptococcus pneumoniae TIGR4	54.986	100	0.556
recA	Latilactobacillus sakei subsp. sakei 23K	53.782	100	0.553
recA	Streptococcus pyogenes NZ131	56.667	95.101	0.539
recA	Lactococcus lactis subsp. cremoris KW2	56.839	94.813	0.539
recA	Streptococcus mitis NCTC 12261	56.535	94.813	0.536
recA	Streptococcus mitis SK321	56.535	94.813	0.536
recA	Streptococcus thermophilus LMD-9	55.758	95.101	0.53
recA	Streptococcus thermophilus LMG 18311	55.758	95.101	0.53
recA	Streptococcus mutans UA159	55.09	96.254	0.53
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	55.521	93.948	0.522