Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPSH112_RS00755 Genome accession   NC_017741
Coordinates   149945..150988 (+) Length   347 a.a.
NCBI ID   WP_000952101.1    Uniprot ID   -
Organism   Helicobacter pylori Shi112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 144945..155988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH112_RS00720 (HPSH112_00710) - 145538..145756 (+) 219 WP_014662185.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HPSH112_RS00725 (HPSH112_00715) ccoP 145758..146636 (+) 879 WP_000346814.1 cytochrome-c oxidase, cbb3-type subunit III -
  HPSH112_RS00730 (HPSH112_00720) - 146647..146853 (+) 207 WP_000670499.1 DUF4006 family protein -
  HPSH112_RS00735 (HPSH112_00730) - 146954..147538 (+) 585 WP_001222054.1 hypothetical protein -
  HPSH112_RS00740 (HPSH112_00735) - 147550..148131 (+) 582 WP_000660354.1 hypothetical protein -
  HPSH112_RS00745 (HPSH112_00740) - 148219..148986 (+) 768 WP_000506354.1 hypothetical protein -
  HPSH112_RS00750 (HPSH112_00745) - 148983..149846 (-) 864 WP_000626269.1 menaquinone biosynthesis family protein -
  HPSH112_RS00755 (HPSH112_00750) recA 149945..150988 (+) 1044 WP_000952101.1 recombinase RecA Machinery gene
  HPSH112_RS00760 (HPSH112_00755) eno 151000..152280 (+) 1281 WP_000955633.1 phosphopyruvate hydratase -
  HPSH112_RS00765 (HPSH112_00760) - 152273..152548 (+) 276 WP_000146217.1 hypothetical protein -
  HPSH112_RS00770 (HPSH112_00765) - 152564..153160 (+) 597 WP_014662186.1 AMIN domain-containing protein -
  HPSH112_RS00775 (HPSH112_00770) - 153165..153653 (+) 489 WP_001216267.1 shikimate kinase -
  HPSH112_RS00780 (HPSH112_00775) - 153675..154631 (+) 957 WP_000952256.1 PDC sensor domain-containing protein -
  HPSH112_RS00785 (HPSH112_00780) - 154628..155749 (-) 1122 WP_000022434.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37683.43 Da        Isoelectric Point: 5.7176

>NTDB_id=42474 HPSH112_RS00755 WP_000952101.1 149945..150988(+) (recA) [Helicobacter pylori Shi112]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=42474 HPSH112_RS00755 WP_000952101.1 149945..150988(+) (recA) [Helicobacter pylori Shi112]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGTCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATC
ATTGCAGAATGCCAAAAAAATGGGGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
GCTAGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGACTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAAGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GTTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAAATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.424

100

0.994
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Staphylococcus aureus strain ATCC 12600

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Acinetobacter nosocomialis M2

63.158

98.559

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

59.942

98.559

0.591
  recA Vibrio cholerae strain A1552

61.012

96.83

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

96.83

0.591
  recA Glaesserella parasuis strain SC1401

60.366

94.524

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Streptococcus pneumoniae R36A

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus thermophilus LMD-9

56.667

95.101

0.539
  recA Streptococcus thermophilus LMG 18311

56.667

95.101

0.539
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53