Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IF130_RS08665 Genome accession   NZ_CP061840
Coordinates   1929599..1930645 (-) Length   348 a.a.
NCBI ID   WP_010947527.1    Uniprot ID   Q5ZUJ7
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1924599..1935645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS08645 (IF130_08645) mavB 1924836..1926029 (-) 1194 WP_011214058.1 Dot/Icm T4SS effector MavB -
  IF130_RS08650 (IF130_08650) - 1926266..1926463 (-) 198 WP_011946738.1 Thivi_2564 family membrane protein -
  IF130_RS08655 (IF130_08655) alaS 1926554..1929136 (-) 2583 WP_011214060.1 alanine--tRNA ligase -
  IF130_RS08660 (IF130_08660) recX 1929154..1929606 (-) 453 WP_010947526.1 recombination regulator RecX -
  IF130_RS08665 (IF130_08665) recA 1929599..1930645 (-) 1047 WP_010947527.1 recombinase RecA Machinery gene
  IF130_RS08670 (IF130_08670) - 1930948..1931883 (-) 936 WP_011214061.1 lpg1803 family Dot/Icm T4SS effector -
  IF130_RS08675 (IF130_08675) cinA 1932177..1932671 (-) 495 WP_011214062.1 CinA family protein Machinery gene
  IF130_RS08680 (IF130_08680) - 1932748..1932945 (-) 198 WP_011215777.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37948.58 Da        Isoelectric Point: 5.0776

>NTDB_id=422982 IF130_RS08665 WP_010947527.1 1929599..1930645(-) (recA) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MEENKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGS
ETRVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELE
QQIRTELLEKKLSVLASSSEDLFETIDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=422982 IF130_RS08665 WP_010947527.1 1929599..1930645(-) (recA) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGGAAGAGAATAAACAAAAAGCACTATCAGCGGCGCTTTCGCAAATTGAACGCCAATTTGGTAAAGGGTCTGTAATGCG
TATGGGAGATAGCACGGTATCACGGGATATTGAAGCAATCTCTACAGGTTCATTAGGTCTTGATATTGCCTTAGGGATAG
GCGGTTTGCCAAAAGGCCGTATTGTTGAAATTTATGGCCCTGAGTCTTCTGGTAAAACCACGCTCACTCTTCAAGTGATC
GCTGAATGTCAAAAAATGGGTGGTACAGCAGCATTTATCGATGCGGAACATGCTCTGGATCCAAGCTATGCTCAGAAACT
TGGTGTGAAGGTGGATGAGCTTTTGGTTTCTCAGCCGGATACAGGCGAGCAAGCTCTGGAAATTACTGATATGCTGGTGC
GTTCTGCAGCAGTTGATGTCGTAATAATTGACTCGGTTGCTGCCTTGACTCCCAAAGCAGAAATTGAGGGAGAAATGGGC
GATTCCCATGTTGGTTTACAGGCAAGATTGATGTCGCAAGCCCTGCGTAAATTGACCGCTAACATTAAACGCTCGAACAC
ACTGGTTATTTTTATTAATCAAATACGTATGAAAATTGGCGTGATGTTTGGTAGCCCTGAAACCACTACAGGGGGTAATG
CTTTGAAATTTTATGCTTCGGTTCGTTTGGATATTCGCCGTATTGGTTCAATTAAAAAGGGCGAAGAAATATTAGGCAGT
GAAACCCGAGTTAAAGTAGTTAAAAATAAGGTGGCGCCACCGTTTAAAATGACTGAGTTTGATATTTTATATAACGAGGG
TATATCTCGTGAGAGTGAAATTATTAATCTGGGTGTTCAATTGAATTTAATTGAAAAATCAGGTGCCTGGTATAGCTACA
AACAGGAAAAAATCGGGCAGGGCAAAGAAAATGTCAGATTATATTTGAAAGAAAATCCCCAAGTCGCTGCAGAGCTTGAA
CAACAAATCCGTACTGAGCTCTTGGAAAAAAAGTTGTCTGTGTTGGCTAGTTCATCAGAAGATCTTTTTGAGACTATAGA
TGACTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZUJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.093

98.563

0.75
  recA Acinetobacter baylyi ADP1

72

100

0.724
  recA Acinetobacter baumannii D1279779

74.695

94.253

0.704
  recA Acinetobacter nosocomialis M2

74.085

94.253

0.698
  recA Glaesserella parasuis strain SC1401

71.681

97.414

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.294

97.701

0.687
  recA Vibrio cholerae strain A1552

70.294

97.701

0.687
  recA Neisseria gonorrhoeae strain FA1090

73.148

93.103

0.681
  recA Neisseria gonorrhoeae MS11

73.148

93.103

0.681
  recA Ralstonia pseudosolanacearum GMI1000

74.679

89.655

0.67
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

98.276

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

95.69

0.621
  recA Helicobacter pylori 26695

65.231

93.391

0.609
  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609
  recA Staphylococcus aureus strain ATCC 12600

64.526

93.966

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

92.241

0.603
  recA Streptococcus mitis SK321

60.856

93.966

0.572
  recA Streptococcus pneumoniae D39

60.55

93.966

0.569
  recA Streptococcus pneumoniae R36A

60.55

93.966

0.569
  recA Streptococcus pneumoniae Rx1

60.55

93.966

0.569
  recA Streptococcus pneumoniae R6

60.55

93.966

0.569
  recA Streptococcus pneumoniae TIGR4

60.55

93.966

0.569
  recA Streptococcus mitis NCTC 12261

60.245

93.966

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.991

92.816

0.566
  recA Streptococcus pyogenes NZ131

59.271

94.54

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60

93.391

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

93.966

0.56
  recA Streptococcus mutans UA159

59.451

94.253

0.56
  recA Streptococcus thermophilus LMG 18311

58.841

94.253

0.555
  recA Streptococcus thermophilus LMD-9

58.841

94.253

0.555