Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ECDH1ME8569_RS13875 Genome accession   NC_017638
Coordinates   2800616..2801677 (-) Length   353 a.a.
NCBI ID   WP_000963138.1    Uniprot ID   -
Organism   Escherichia coli DH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2795616..2806677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECDH1ME8569_RS13855 (ECDH1ME8569_2606) csrA 2796869..2797054 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  ECDH1ME8569_RS13860 (ECDH1ME8569_2607) alaS 2797289..2799919 (-) 2631 WP_000047184.1 alanine--tRNA ligase -
  ECDH1ME8569_RS13870 (ECDH1ME8569_2608) recX 2800047..2800547 (-) 501 WP_000140508.1 recombination regulator RecX -
  ECDH1ME8569_RS13875 (ECDH1ME8569_2609) recA 2800616..2801677 (-) 1062 WP_000963138.1 recombinase RecA Machinery gene
  ECDH1ME8569_RS13880 (ECDH1ME8569_2610) pncC 2801757..2802254 (-) 498 WP_000132231.1 nicotinamide-nucleotide amidase -
  ECDH1ME8569_RS13885 (ECDH1ME8569_2611) mltB 2802399..2803484 (-) 1086 WP_001295177.1 lytic murein transglycosylase B -
  ECDH1ME8569_RS13890 (ECDH1ME8569_2612) srlA 2803740..2804303 (+) 564 WP_000573321.1 PTS glucitol/sorbitol transporter subunit IIC -
  ECDH1ME8569_RS13895 (ECDH1ME8569_2613) srlE 2804300..2805259 (+) 960 WP_000148878.1 PTS glucitol/sorbitol transporter subunit IIB -
  ECDH1ME8569_RS13900 (ECDH1ME8569_2614) srlB 2805270..2805641 (+) 372 WP_000216194.1 PTS glucitol/sorbitol transporter subunit IIA -
  ECDH1ME8569_RS13905 (ECDH1ME8569_2615) srlD 2805645..2806424 (+) 780 WP_001077358.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38031.41 Da        Isoelectric Point: 4.7573

>NTDB_id=41724 ECDH1ME8569_RS13875 WP_000963138.1 2800616..2801677(-) (recA) [Escherichia coli DH1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
DDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=41724 ECDH1ME8569_RS13875 WP_000963138.1 2800616..2801677(-) (recA) [Escherichia coli DH1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GACGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.768

0.788
  recA Vibrio cholerae strain A1552

83.988

93.768

0.788
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baumannii D1279779

73.78

92.918

0.686
  recA Acinetobacter baylyi ADP1

73.476

92.918

0.683
  recA Acinetobacter nosocomialis M2

73.476

92.918

0.683
  recA Glaesserella parasuis strain SC1401

69.164

98.3

0.68
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Ralstonia pseudosolanacearum GMI1000

69.841

89.235

0.623
  recA Streptococcus mitis SK321

60

99.15

0.595
  recA Streptococcus mitis NCTC 12261

60

99.15

0.595
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pneumoniae Rx1

63.158

91.501

0.578
  recA Streptococcus pneumoniae TIGR4

63.158

91.501

0.578
  recA Streptococcus pneumoniae R6

63.158

91.501

0.578
  recA Streptococcus pneumoniae D39

63.158

91.501

0.578
  recA Streptococcus pneumoniae R36A

63.158

91.501

0.578
  recA Staphylococcus aureus strain ATCC 12600

62.27

92.351

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.785

0.572
  recA Streptococcus mutans UA159

61.846

92.068

0.569
  recA Streptococcus pyogenes NZ131

61.846

92.068

0.569
  recA Streptococcus thermophilus LMG 18311

61.846

92.068

0.569
  recA Streptococcus thermophilus LMD-9

61.846

92.068

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.334

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.068

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.935

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552

Multiple sequence alignment