Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   GPA00_RS03650 Genome accession   NZ_CP046629
Coordinates   708605..708898 (+) Length   97 a.a.
NCBI ID   WP_074629067.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703605..713898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS03625 (GPA00_03625) - 705589..705957 (+) 369 WP_094140982.1 DUF1033 family protein -
  GPA00_RS03630 (GPA00_03630) comYA 706026..706967 (+) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  GPA00_RS03635 (GPA00_03635) comYB 706891..707934 (+) 1044 WP_167697815.1 competence type IV pilus assembly protein ComGB Machinery gene
  GPA00_RS03640 (GPA00_03640) comYC 707934..708236 (+) 303 WP_021141433.1 competence type IV pilus major pilin ComGC Machinery gene
  GPA00_RS03645 (GPA00_03645) comGD 708211..708651 (+) 441 WP_157327520.1 competence type IV pilus minor pilin ComGD -
  GPA00_RS03650 (GPA00_03650) comYE 708605..708898 (+) 294 WP_074629067.1 competence type IV pilus minor pilin ComGE Machinery gene
  GPA00_RS03655 (GPA00_03655) comYF 708882..709319 (+) 438 WP_157327522.1 competence type IV pilus minor pilin ComGF Machinery gene
  GPA00_RS03660 (GPA00_03660) comGG 709348..709641 (+) 294 WP_268894141.1 competence type IV pilus minor pilin ComGG -
  GPA00_RS03665 (GPA00_03665) comYH 709695..710651 (+) 957 WP_024344497.1 class I SAM-dependent methyltransferase Machinery gene
  GPA00_RS03670 (GPA00_03670) - 710705..711904 (+) 1200 WP_045798327.1 acetate kinase -
  GPA00_RS03675 (GPA00_03675) - 712062..712259 (+) 198 WP_027968026.1 helix-turn-helix transcriptional regulator -
  GPA00_RS03680 (GPA00_03680) - 712315..712767 (+) 453 WP_074483978.1 ABC transporter permease -
  GPA00_RS03685 (GPA00_03685) - 712779..713414 (+) 636 WP_141348477.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11029.95 Da        Isoelectric Point: 6.8788

>NTDB_id=406294 GPA00_RS03650 WP_074629067.1 708605..708898(+) (comYE) [Streptococcus equinus strain CNU G6]
MVIIKRQKLKAYILLESLVALALLATITILVLGEMDKSRHQMQDSLHQQEVLNVATMAVQTGQDDLLMNGVEVHITRRDG
ELYVYDGQKEVMHVKKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=406294 GPA00_RS03650 WP_074629067.1 708605..708898(+) (comYE) [Streptococcus equinus strain CNU G6]
GTGGTAATTATAAAAAGACAGAAACTAAAAGCTTACATACTCCTTGAAAGTTTGGTTGCTTTAGCTTTGCTAGCTACCAT
TACAATTCTTGTTTTGGGAGAAATGGACAAAAGTCGCCACCAGATGCAAGATAGCTTACATCAGCAAGAGGTTCTCAATG
TCGCTACTATGGCTGTTCAAACAGGACAAGATGATTTGTTGATGAATGGTGTTGAGGTTCATATTACTAGACGAGACGGA
GAACTTTATGTCTACGATGGGCAAAAAGAGGTGATGCATGTTAAGAAGAACTAG

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

50

98.969

0.495
  comYE Streptococcus mutans UA159

50

98.969

0.495
  comGE/cglE Streptococcus pneumoniae Rx1

41.935

95.876

0.402
  comGE/cglE Streptococcus pneumoniae D39

41.935

95.876

0.402
  comGE/cglE Streptococcus pneumoniae R6

41.935

95.876

0.402
  comGE/cglE Streptococcus pneumoniae TIGR4

41.935

95.876

0.402
  comGE/cglE Streptococcus mitis SK321

40.86

95.876

0.392
  comGE/cglE Streptococcus mitis NCTC 12261

40.86

95.876

0.392

Multiple sequence alignment